Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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| Understanding Galaxy history system |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Name tags for following complex histories
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| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
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Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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| Exporting to Onedata remote |
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
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Accessing IIIF from within Galaxy
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| Getting started with Onedata distributed storage | |||
| Submitting sequence data to ENA |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Delphine Lariviere
Teresa Müller
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Bérénice Batut
William Durand
Marius van den Beek
Delphine Lariviere
Dave Clements
Boris Depoortere
Nadia Goué
Ahmed Hamid Awan
Lisanna Paladin
Aysam Guerler
Toby Hodges
Adelaide Rhodes
Pavankumar Videm
Nicola Soranzo
Łukasz Opioła
Saskia Hiltemann
Lucille Delisle
Nic Herndon
Anthony Bretaudeau
Daniela Butano
Mateusz Kuzak
Armin Dadras
Yo Yehudi
Bartosz Walkowicz
Yvan Le Bras
Wendi Bacon
Simon Bray
Maria Doyle
Wolfgang Maier
Avani Khadilkar
Martin Čech
John Chilton
Enis Afgan
Miguel Roncoroni
Elizabeth Sheets
Helena Rasche
Bert Droesbeke
Nate Coraor
Anup Kumar
Simon Gladman
Daniela Schneider
Anton Nekrutenko
Gildas Le Corguillé
Jon Trow
Laila Los
Anne Fouilloux
Teresa Müller
Fotis E. Psomopoulos
Rita Gautschy
Charles Overbeck
Björn Grüning
Clea Siguret
Niall Beard
Deepti Varshney
Cristóbal Gallardo
Anne Pajon
Ekaterina Polkh
Funding
These individuals or organisations provided funding support for the development of this resource
