Delphine Lariviere

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

3 Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Assembly
• Topic: Using Galaxy and Managing your Data
• Topic: Introduction to Galaxy Analyses

24 Tutorials

• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data ✍️ 🧐
• Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads ✍️
• Assembly / Making sense of a newly assembled genome ✍️
• Assembly / Unicycler Assembly ✍️ 🧐
• Assembly / ERGA post-assembly QC ✍️ 🧐
• Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step ✍️ 🧐
• Assembly / Decontamination of a genome assembly ✍️ 🧐
• Assembly / Hybrid genome assembly - Nanopore and Illumina 🧐
• Genome Annotation / Essential genes detection with Transposon insertion sequencing ✍️ 🧐
• Proteomics / Proteogenomics 2: Database Search ✍️
• Statistics and machine learning / GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000 🧐
• Statistics and machine learning / Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK 🧐
• Galaxy Community Building / What's a Special Interest Group? 🧐
• Galaxy Community Building / Creating a Special Interest Group 🧐
• Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy ✍️ 🧐
• Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
• Using Galaxy and Managing your Data / JupyterLab in Galaxy 🧐

5 Slides

• Assembly / Unicycler Assembly ✍️ 🧐
• Assembly / Deeper look into Genome Assembly algorithms ✍️
• Genome Annotation / Essential genes detection with Transposon insertion sequencing ✍️ 🧐

4 FAQs

• Adding a tag to a collection
• Renaming a collection
• Add genome and annotations to IGV from Galaxy
• Add Mapped reads track to IGV from Galaxy

10 Video Recordings

• Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads 💬 🗣
• Assembly / ERGA post-assembly QC 💬 🗣
• Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step 💬 🗣
• Assembly / Decontamination of a genome assembly 💬 🗣
• Using Galaxy and Managing your Data / Using dataset collections 💬 🗣

6 Events

• Galaxy Training Academy 2025 🎪 🧑‍🏫
• Galaxy Training Academy 2026 🎪 🧑‍🏫
• Galaxy Training Academy 2024 🎪 🧑‍🏫

Your Contributor Card

GitHub Activity

github Issues Reported

News

External Links

Favourite Topics

Favourite Formats