Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Mateo Boudet

Deepti Varshney

Maria Doyle

Miaomiao Zhou

Erwan Corre

William Durand

Teresa Müller

Laura Leroi

Helena Rasche

Anika Erxleben

Ekaterina Polkh

Felicitas Kindel

Nathan Dunn

Niall Beard

Jonathan Kreplak

Björn Grüning

Romane LIBOUBAN

Jasper Ouwerkerk

Gildas Le Corguillé

Anna Syme

Simon Gladman

Torsten Seemann

Delphine Lariviere

Esteban Perez-Wohlfeil

Nicola Soranzo

Alexandre Cormier

Valentin Loux

Stéphanie Robin

Bérénice Batut

Simon Bray

Cristóbal Gallardo

Anton Nekrutenko

Guillaume Gautreau

Saskia Hiltemann

Bazante Sanders

Kenji Fujihara

Paul Zierep

Twishi Gulati

Hélène Chiapello

Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

IFB

Avans

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.