Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Alexandre Cormier

Deepti Varshney

Valentin Loux

Simon Gladman

Jonathan Kreplak

Esteban Perez-Wohlfeil

Romane LIBOUBAN

Erwan Corre

Miaomiao Zhou

Nicola Soranzo

Torsten Seemann

Felicitas Kindel

Anthony Bretaudeau

Nathan Dunn

Tristan Reynolds

Delphine Lariviere

Kenji Fujihara

Helena Rasche

Cristóbal Gallardo

Gildas Le Corguillé

Simon Bray

Hélène Chiapello

Anika Erxleben

Maria Doyle

Paul Zierep

William Durand

Jasper Ouwerkerk

Niall Beard

Ekaterina Polkh

Bazante Sanders

Teresa Müller

Twishi Gulati

Bérénice Batut

Björn Grüning

Anna Syme

Anton Nekrutenko

Guillaume Gautreau

Laura Leroi

Stéphanie Robin

Mateo Boudet

Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

ABRomics

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

The University of Melbourne

Melbourne Bioinformatics

Avans

Australian BioCommons