Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Erwan Corre

Anthony Bretaudeau

Twishi Gulati

Mateo Boudet

Anna Syme

Gildas Le Corguillé

Ekaterina Polkh

Felicitas Kindel

Bazante Sanders

Valentin Loux

Maria Doyle

Simon Bray

Niall Beard

Bérénice Batut

Jasper Ouwerkerk

Torsten Seemann

Romane LIBOUBAN

Paul Zierep

Guillaume Gautreau

Simon Gladman

Teresa Müller

Stéphanie Robin

Björn Grüning

Nathan Dunn

Esteban Perez-Wohlfeil

Laura Leroi

Tristan Reynolds

Cristóbal Gallardo

Helena Rasche

William Durand

Anika Erxleben

Deepti Varshney

Saskia Hiltemann

Hélène Chiapello

Kenji Fujihara

Anton Nekrutenko

Miaomiao Zhou

Delphine Lariviere

Alexandre Cormier

Nicola Soranzo

Jonathan Kreplak

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Australian BioCommons

ELIXIR Europe

Melbourne Bioinformatics

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

The University of Melbourne