Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Jasper Ouwerkerk

Simon Bray

Deepti Varshney

Teresa Müller

Anna Syme

Twishi Gulati

Kenji Fujihara

William Durand

Ekaterina Polkh

Simon Gladman

Saskia Hiltemann

Valentin Loux

Cristóbal Gallardo

Delphine Lariviere

Anika Erxleben

Anton Nekrutenko

Niall Beard

Guillaume Gautreau

Helena Rasche

Gildas Le Corguillé

Anthony Bretaudeau

Björn Grüning

Hélène Chiapello

Esteban Perez-Wohlfeil

Alexandre Cormier

Torsten Seemann

Bérénice Batut

Miaomiao Zhou

Maria Doyle

Laura Leroi

Erwan Corre

Stéphanie Robin

Bazante Sanders

Felicitas Kindel

Nicola Soranzo

Paul Zierep

Mateo Boudet

Nathan Dunn

Romane LIBOUBAN

Jonathan Kreplak

Funding

These individuals or organisations provided funding support for the development of this resource

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

ABRomics

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.