Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Delphine Lariviere

Laura Leroi

Ekaterina Polkh

Deepti Varshney

Romane LIBOUBAN

Simon Gladman

Nicola Soranzo

Hélène Chiapello

Gildas Le Corguillé

Teresa Müller

Guillaume Gautreau

Björn Grüning

Anton Nekrutenko

Alexandre Cormier

Valentin Loux

Anna Syme

Jasper Ouwerkerk

Paul Zierep

Twishi Gulati

Jonathan Kreplak

William Durand

Niall Beard

Saskia Hiltemann

Mateo Boudet

Anthony Bretaudeau

Simon Bray

Cristóbal Gallardo

Stéphanie Robin

Esteban Perez-Wohlfeil

Miaomiao Zhou

Bérénice Batut

Kenji Fujihara

Helena Rasche

Felicitas Kindel

Bazante Sanders

Torsten Seemann

Nathan Dunn

Maria Doyle

Anika Erxleben

Erwan Corre

Funding

These individuals or organisations provided funding support for the development of this resource

IFB

ELIXIR Europe

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics