Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Mateo Boudet

Esteban Perez-Wohlfeil

Torsten Seemann

Romane LIBOUBAN

Niall Beard

Paul Zierep

Laura Leroi

Anthony Bretaudeau

Kenji Fujihara

Björn Grüning

Erwan Corre

Simon Bray

Gildas Le Corguillé

Twishi Gulati

Stéphanie Robin

Valentin Loux

Delphine Lariviere

Saskia Hiltemann

Simon Gladman

Bazante Sanders

Guillaume Gautreau

Miaomiao Zhou

Cristóbal Gallardo

Teresa Müller

Deepti Varshney

Helena Rasche

Saim Momin

Maria Doyle

Nicola Soranzo

Anton Nekrutenko

Jonathan Kreplak

Tristan Reynolds

Alexandre Cormier

Hélène Chiapello

Nathan Dunn

Anika Erxleben

Anna Syme

Bérénice Batut

Ekaterina Polkh

Jasper Ouwerkerk

William Durand

Niklas Mayle

Felicitas Kindel

Funding

These individuals or organisations provided funding support for the development of this resource

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Avans

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ELIXIR Europe

Australian BioCommons

ABRomics

The University of Melbourne

Melbourne Bioinformatics