Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Hélène Chiapello

Nicola Soranzo

Deepti Varshney

Twishi Gulati

Valentin Loux

Cristóbal Gallardo

Tristan Reynolds

Jonathan Kreplak

Nathan Dunn

Simon Gladman

Stéphanie Robin

Ekaterina Polkh

Björn Grüning

Helena Rasche

Bazante Sanders

Torsten Seemann

Saim Momin

Bérénice Batut

Guillaume Gautreau

Delphine Lariviere

William Durand

Miaomiao Zhou

Niall Beard

Saskia Hiltemann

Laura Leroi

Esteban Perez-Wohlfeil

Teresa Müller

Paul Zierep

Anika Erxleben

Felicitas Kindel

Jasper Ouwerkerk

Simon Bray

Alexandre Cormier

Romane LIBOUBAN

Anton Nekrutenko

Niklas Mayle

Erwan Corre

Gildas Le Corguillé

Maria Doyle

Kenji Fujihara

Mateo Boudet

Anna Syme

Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

The University of Melbourne

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Australian BioCommons

IFB

Melbourne Bioinformatics

Avans

ABRomics