Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Paul Zierep

Maria Doyle

Björn Grüning

Anthony Bretaudeau

Felicitas Kindel

Teresa Müller

Laura Leroi

Stéphanie Robin

Esteban Perez-Wohlfeil

Tristan Reynolds

Romane LIBOUBAN

Simon Bray

Anika Erxleben

William Durand

Jonathan Kreplak

Cristóbal Gallardo

Erwan Corre

Anton Nekrutenko

Saskia Hiltemann

Mateo Boudet

Bazante Sanders

Valentin Loux

Kenji Fujihara

Delphine Lariviere

Nicola Soranzo

Twishi Gulati

Gildas Le Corguillé

Niall Beard

Anna Syme

Bérénice Batut

Miaomiao Zhou

Guillaume Gautreau

Torsten Seemann

Hélène Chiapello

Alexandre Cormier

Ekaterina Polkh

Simon Gladman

Jasper Ouwerkerk

Deepti Varshney

Nathan Dunn

Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

The University of Melbourne

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

Melbourne Bioinformatics

Avans

IFB

Australian BioCommons