Stéphanie Robin

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

18 Tutorials

• Assembly / Genome assembly using PacBio data ✍️ 🧐
• Assembly / Genome Assembly Quality Control ✍️
• Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc ✍️
• Genome Annotation / Masking repeats with RepeatMasker ✍️ 🧐
• Genome Annotation / Refining Genome Annotations with Apollo (prokaryotes) 🧐
• Genome Annotation / Genome annotation with Funannotate 📝 🧐
• Computational chemistry / High Throughput Molecular Dynamics and Analysis 🧐
• Single Cell / Single-cell quality control with scater 🧐
• Single Cell / Downstream Single-cell RNA analysis with RaceID 🧐
• Single Cell / Pre-processing of Single-Cell RNA Data 🧐
• Visualisation / Genomic Data Visualisation with JBrowse 🧐
• Sequence analysis / Quality Control ✍️
• Sequence analysis / Qualitätskontrolle ✍️
• Sequence analysis / Control de calidad ✍️
• Sequence analysis / Controllo qualità ✍️

5 Slides

• Assembly / An introduction to get started in genome assembly and annotation 📝
• Assembly / Genome assembly and assembly QC - Introduction short version ✍️
• Assembly / Genome assembly quality control. ✍️
• Genome Annotation / Introduction to Genome Annotation 🧐
• Sequence analysis / Quality Control ✍️

1 Video Recording

• Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 💬

3 Events

• Galaxy Training Academy 2025 🧑‍🏫
• Galaxy Training Academy 2026 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

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GitHub Activity

github Issues Reported

3 Merged Pull Requests

See all of the github Pull Requests and github Commits by Stéphanie Robin.

• updating tutorial with new bam file
  genome-annotation
• Add a new tutorial about lncRNAs annotation (with FEELnc)
  genome-annotation
  new tutorial
• Flye assembly
  assembly
  new tutorial
  new contributor(s)

Reviewed 3 PRs

We love our community reviewing each other's work!

• Updated tuto assembly pacbio to include hifi
  assembly
• Genome annotation: funannotate + repeatmasker tutorials
  genome-annotation
• Flye assembly
  assembly
  new tutorial
  new contributor(s)

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