Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Material

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First Time Using Galaxy

A quick look at using Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Galaxy
A short introduction to Galaxy

Your First Analysis

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy Basics for everyone
Galaxy Basics for genomics
Introduction to Digital Humanities in Galaxy
Introduction to Galaxy as an RDM platform

Go a bit further

Explore the Galaxy a bit further after you've finished the basics.

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
From peaks to genes
How to reproduce published Galaxy analyses
Introduction to Genomics and Galaxy
NGS data logistics
Options for using Galaxy

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Best Practices for Citing Galaxy
Introduction to the Dataverse Integration in Galaxy

Learning Pathways

Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoTeresa Müller avatar Teresa Müller

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Contributors

This material was contributed to by:

orcid logoAnthony Bretaudeau avatar Anthony BretaudeauCyril Monjeaud avatar Cyril Monjeaudorcid logoDave Clements avatar Dave Clementsorcid logoMatthias Bernt avatar Matthias Berntorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanScott Cain avatar Scott CainDonny Vrins avatar Donny Vrinsorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoMarisa Loach avatar Marisa LoachOlha Nahorna avatar Olha Nahornaorcid logoAnna Syme avatar Anna SymeChristopher Barnett avatar Christopher Barnettorcid logoMelanie Föll avatar Melanie Föllorcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoNadia Goué avatar Nadia Gouéorcid logoYvan Le Bras avatar Yvan Le BrasNiall Beard avatar Niall BeardDilmurat Yusuf avatar Dilmurat YusufMirela Minkova avatar Mirela Minkovaorcid logoWendi Bacon avatar Wendi BaconYongbin Li avatar Yongbin LiDavid López avatar David LópezMélanie Pétéra avatar Mélanie PétéraSarah Peter avatar Sarah Peterorcid logoAnup Kumar avatar Anup KumarGoodnews Sandy avatar Goodnews Sandyorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoRand Zoabi avatar Rand Zoabiorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPhil Reed avatar Phil ReedAnton Nekrutenko avatar Anton Nekrutenkoorcid logoMartin Čech avatar Martin ČechGildas Le Corguillé avatar Gildas Le Corguilléorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTristan Reynolds avatar Tristan ReynoldsAndrea Bagnacani avatar Andrea Bagnacaniorcid logoBjörn Grüning avatar Björn Grüningorcid logoJohn Davis avatar John Davisorcid logoClemens Blank avatar Clemens Blankorcid logoMorgan Howells avatar Morgan Howellsorcid logoCristóbal Gallardo avatar Cristóbal GallardoAnne Pajon avatar Anne Pajonorcid logoBérénice Batut avatar Bérénice Batutorcid logoTeresa Müller avatar Teresa Müllerorcid logoMaria Doyle avatar Maria Doyleorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoFlorian Heyl avatar Florian HeylJoachim Wolff avatar Joachim WolffWilliam Durand avatar William DurandAlaa Elghamry avatar Alaa Elghamryorcid logoArmin Dadras avatar Armin Dadrasorcid logoMarius van den Beek avatar Marius van den Beekorcid logoHelena Rasche avatar Helena RascheMehmet Tekman avatar Mehmet TekmanSebastian Schaaf avatar Sebastian Schaaforcid logoRenato Alves avatar Renato Alvesorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoNate Coraor avatar Nate CoraorGareth Price avatar Gareth PriceMichele Maroni avatar Michele Maroniorcid logoLucille Delisle avatar Lucille Delisle

Funding

These individuals or organisations provided funding support for the development of this resource