Niall Beard
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Tutorials
- Variant Analysis / Calling variants in diploid systems 🧐
- Variant Analysis / Calling very rare variants 🧐
- Variant Analysis / Microbial Variant Calling 🧐
- Variant Analysis / Mapping and molecular identification of phenotype-causing mutations 🧐
- Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease 🧐
- Variant Analysis / Calling variants in non-diploid systems 🧐
- Using Galaxy and Managing your Data / Rule Based Uploader: Advanced 🧐
- Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Using Galaxy and Managing your Data / Extracting Workflows from Histories 🧐
- Using Galaxy and Managing your Data / Using dataset collections 🧐
- Ecology / RAD-Seq to construct genetic maps 🧐
- Ecology / RAD-Seq Reference-based data analysis 🧐
- Ecology / RAD-Seq de-novo data analysis 🧐
- Microbiome / 16S Microbial Analysis with mothur (extended) 🧐
- Microbiome / Analyses of metagenomics data - The global picture 🧐
- Development in Galaxy / JavaScript plugins 🧐
- Development in Galaxy / Generic plugins 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Data source integration 🧐
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training 🧐
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy 🧐
- Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
- Introduction to Galaxy Analyses / From peaks to genes 🧐
- Introduction to Galaxy Analyses / NGS data logistics 🧐
- Introduction to Galaxy Analyses / IGV Introduction 🧐
- Sequence analysis / Mapping 🧐
- Statistics and machine learning / Interval-Wise Testing for omics data 🧐
- Galaxy Server administration / Ansible 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
- Galaxy Server administration / Galaxy Database schema 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Genome Annotation / Genome Annotation 🧐
- Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker 🧐
- Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) 🧐
- Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method 🧐
- Proteomics / Peptide and Protein ID using OpenMS tools 🧐
- Proteomics / Metaproteomics tutorial 🧐
- Proteomics / Secretome Prediction 🧐
- Proteomics / Protein FASTA Database Handling 🧐
- Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS 🧐
- Assembly / Making sense of a newly assembled genome 🧐
- Assembly / Unicycler Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Transcriptomics / Differential abundance testing of small RNAs 🧐
- Transcriptomics / Reference-based RNA-Seq data analysis 🧐
- Transcriptomics / Reference-based RNAseq data analysis (long) 🧐
- Transcriptomics / De novo transcriptome reconstruction with RNA-Seq 🧐
- Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection 🧐
- Epigenetics / Identification of the binding sites of the Estrogen receptor 🧐
- Epigenetics / Hi-C analysis of Drosophila melanogaster cells using HiCExplorer 🧐
- Epigenetics / DNA Methylation data analysis 🧐
- Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via its interface 🧐
- Contributing to the Galaxy Training Material / Contributing to the Galaxy Training Network with GitHub 🧐
- Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
- Contributing to the Galaxy Training Material / Generating PDF artefacts of the website 🧐
- Contributing to the Galaxy Training Material / Including a new topic 🧐
- Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours 🧐
Slides
- Development in Galaxy / Visualizations: JavaScript Plugins 🧐
- Development in Galaxy / Tool Dependencies and Conda 🧐
- Development in Galaxy / Generic plugins 🧐
- Development in Galaxy / Prerequisites for building software/conda packages 🧐
- Development in Galaxy / Galaxy Webhooks 🧐
- Development in Galaxy / Tool Dependencies and Containers 🧐
- Development in Galaxy / Scripting Galaxy using the API and BioBlend 🧐
- Development in Galaxy / Galaxy Interactive Tours 🧐
- Development in Galaxy / Galaxy Interactive Environments 🧐
- Development in Galaxy / Tool development and integration into Galaxy 🧐
- Development in Galaxy / Tool Shed: sharing Galaxy tools 🧐
- Sequence analysis / Mapping 🧐
- Sequence analysis / Quality Control 🧐
- Galaxy Server administration / Docker and Galaxy 🧐
- Galaxy Server administration / Server: Other 🧐
- Galaxy Server administration / Connecting Galaxy to a compute cluster 🧐
- Galaxy Server administration / User, Role, Group, Quota, and Authentication managment 🧐
- Genome Annotation / Genome annotation with Prokka 🧐
- Assembly / Unicycler Assembly 🧐
- Assembly / An Introduction to Genome Assembly 🧐
- Assembly / De Bruijn Graph Assembly 🧐
- Transcriptomics / Visualization of RNA-Seq results with CummeRbund 🧐
- Contributing to the Galaxy Training Material / Contributing with GitHub via command-line 🧐
- Contributing to the Galaxy Training Material / Creating Slides 🧐
GitHub Activity
github Issues Reported
1 Merged Pull Requests
See all of the github Pull Requests and github Commits by Niall Beard.
Reviewed 3 PRs
We love our community reviewing each other's work!
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schema.org annotation: use Course and add more properties
template-and-tools -
Add some more JSON-LD Terms
work-in-progresstemplate-and-tools -
Added schema.org annotations for training materials
