Statistics and machine learning

Statistical Analyses for omics data and machine learning using Galaxy tools

Material

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Generative Artificial Intelligence and Large Langage Model

Tutorials covering the creation, pretraining, and applications of Generative Artificial Intelligence and Large Language Models.

Lesson Slides Hands-on Recordings Input dataset Workflows

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
interactive-tools machine-learning deep-learning jupyter-lab image-segmentation protein-3D-structure
Age prediction using machine learning
Basics of machine learning
Building the LORIS LLR6 PanCancer Model Using PyCaret
LORIS Score Model Machine Learning PyCaret
Classification in Machine Learning
Clustering in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
interactive-tools machine-learning deep-learning jupyter-lab fine-tuning dephosphorylation-site-prediction
Image classification in Galaxy with fruit 360 dataset
Interval-Wise Testing for omics data
Introduction to Machine Learning using R
interactive-tools
Introduction to deep learning
Machine learning: classification and regression
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
Machine learning Pan-cancer cancer biomarkers oncogenes and tumor suppressor genes
Regression in Machine Learning
Supervised Learning with Hyperdimensional Computing
Text-Mining Differences in Chinese Newspaper Articles
Humanities Text_mining
Text-mining with the SimText toolset
interactive-tools
Train and Test a Deep learning image classifier with Galaxy-Ludwig
MNIST Deep learning Ludwig

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Editorial Board

This material is reviewed by our Editorial Board:

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Contributors

This material was contributed to by:

Simon Bray avatar Simon BrayDennis Lal group avatar Dennis Lal groupRalf Gabriels avatar Ralf Gabrielsorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoBérénice Batut avatar Bérénice BatutMélanie Petera avatar Mélanie PeteraGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlireza Khanteymoori avatar Alireza KhanteymooriRaphael Mourad avatar Raphael Mouradorcid logoTeresa Müller avatar Teresa Müllerorcid logoBjörn Grüning avatar Björn Grüningorcid logoArmin Dadras avatar Armin DadrasKaivan Kamali avatar Kaivan Kamaliorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoDaniela Schneider avatar Daniela SchneiderMarzia A Cremona avatar Marzia A CremonaWandrille Duchemin avatar Wandrille DucheminVijay avatar VijayAnup Kumar avatar Anup Kumarorcid logoMichelle Terese Savage avatar Michelle Terese SavageEkaterina Polkh avatar Ekaterina Polkhorcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra Juniororcid logoJunhao Qiu avatar Junhao Qiuorcid logoNate Coraor avatar Nate Coraororcid logoHelena Rasche avatar Helena Rascheorcid logoFabio Cumbo avatar Fabio Cumboorcid logoMarie Gramm avatar Marie Grammorcid logoMartin Čech avatar Martin Čechorcid logoJeremy Goecks avatar Jeremy Goecksorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoStella Fragkouli avatar Stella Fragkouli

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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de.NBI
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ELIXIR Europe
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.