Anne Fouilloux
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
1 Editorial Role
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Climate
30 Tutorials
- Imaging / Object tracking using CellProfiler βοΈ
- Imaging / Nucleoli segmentation and feature extraction using CellProfiler π§
- Imaging / Using BioImage.IO models for image analysis in Galaxy βοΈ π§
- Imaging / Voronoi segmentation βοΈ
- Introduction to Galaxy Analyses / How to reproduce published Galaxy analyses βοΈ
- Introduction to Galaxy Analyses / Galaxy Basics for everyone βοΈ π§
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) βοΈ π§
- Climate / Collaboration with JupyterGIS βοΈ π§
- Climate / Getting your hands-on climate data βοΈ π§
- Climate / Visualize Climate data with Panoply netCDF viewer βοΈ π§
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab βοΈ π§
- Climate / Pangeo Notebook in Galaxy - Introduction to Xarray βοΈ π§
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools βοΈ π§
- Using Galaxy and Managing your Data / JupyterLab in Galaxy βοΈ π§
- Galaxy Server administration / Use Apptainer containers for running Galaxy jobs π§
- Galaxy Server administration / Galaxy Monitoring with gxadmin π§
- Ecology / Metabarcoding/eDNA through Obitools π§
- Ecology / Visualize EBV cube data with Panoply netCDF viewer βοΈ
- Sequence analysis / Quality Control π§
- Transcriptomics / RNA Seq Counts to Viz in R π§
12 Slides
-
Imaging
/
Nucleoli Segmentation
&
Feature Extraction
using CellProfiler π§ - Introduction to Galaxy Analyses / Introduction to Galaxy βοΈ π§
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) βοΈ π§
- Climate / Introduction to climate data βοΈ π§
- Climate / The Pangeo ecosystem βοΈ π§
- Climate / Pangeo ecosystem 101 for everyone βοΈ π§
- Assembly / De Bruijn Graph Assembly π§
8 FAQs
- I risultati possono variare βοΈ
- Los resultados pueden variar βοΈ
- Ergebnisse kΓΆnnen variieren βοΈ
- Results may vary
- Detecting the datatype (file format)
- Find all Histories and purge (aka permanently delete)
- Launch JupyterLab
- Opening the workflow editor
11 Video Recordings
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) π¬
- Introduction to Galaxy Analyses / Galaxy Basics for everyone π£
- Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) π£
- Climate / Collaboration with JupyterGIS π¬ π£
- Climate / Pangeo Notebook in Galaxy - Introduction to Xarray π¬ π£
- Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools π¬ π£
- Using Galaxy and Managing your Data / Using dataset collections π¬
- Foundations of Data Science / R basics in Galaxy π¬
2 Events
- Galaxy Training Academy 2025 π§βπ«
- Galaxy Training Academy 2026 π§βπ«
Your Contributor Card
orcid Anne Fouilloux
Editorial board member for Climate
30 Tutorials 12 Slides 11 Videos 8 FAQs 2 Events Editorial Board
GTN contributor since 2019-07
GitHub Activity
github Issues Reported
23 Merged Pull Requests
See all of the github Pull Requests and github Commits by Anne Fouilloux.
-
Imaging: add an Earth Observation path to the BioImage.IO models tutorial
imaging -
Imaging: add an Earth Observation path to the CellProfiler object-tracking tutorial
imaging -
Voronoi Segmentation for different scientific disciplines (bioimaging & Earth Observation)
imaging -
add subtopics for climate
climate -
fix Getting your hands on climate
climate
Reviewed 42 PRs
We love our community reviewing each other's work!
-
Imaging: add an Earth Observation path to the BioImage.IO models tutorial
imaging -
Added note regarding the timeseries plot
climate -
[Google Form] New Recording Submission! - Collaboration with JupyterGIS - annefou
climateGTA -
Event page gta added Climat track
template-and-tools -
JupyterGIS collaborative features tutorial
template-and-toolsclimate
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