Workflows

These workflows are associated with A short introduction to Galaxy

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Galaxy Intro Short

Last updated Oct 21, 2020

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Tests: ❌ Results: Not yet automated

Download Galaxy Workflow.ga Galaxy Main Galaxy Australia Galaxy France Galaxy Europe Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\nmutant_R1"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["FastQC"];
  0 -->|output| 1;
  2["Filter by quality"];
  0 -->|output| 2;
  ed753d9b-5f66-4346-87b6-a329839aef5d["Output\nfilter1"];
  2 --> ed753d9b-5f66-4346-87b6-a329839aef5d;
  style ed753d9b-5f66-4346-87b6-a329839aef5d stroke:#2c3143,stroke-width:4px;
  3["Filter by quality"];
  0 -->|output| 3;
  f073ee75-10e7-43c9-b9d5-7a9c6117bd8f["Output\nfilter2"];
  3 --> f073ee75-10e7-43c9-b9d5-7a9c6117bd8f;
  style f073ee75-10e7-43c9-b9d5-7a9c6117bd8f stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: