Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
|
Introduction to Genome Annotation
|
Prokaryotes
Annotation of prokaryotic genomes.
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Bazante Sanders
Kenji Fujihara
Saim Momin
Mateo Boudet
Paul Zierep
Stéphanie Robin
Delphine Lariviere
Alexandre Cormier
Guillaume Gautreau
Saskia Hiltemann
Torsten Seemann
Anika Erxleben
Anthony Bretaudeau
Niklas Mayle
William Durand
Esteban Perez-Wohlfeil
Simon Bray
Valentin Loux
Cristóbal Gallardo
Felicitas Kindel
Hélène Chiapello
Teresa Müller
Björn Grüning
Maria Doyle
Laura Leroi
Anton Nekrutenko
Nicola Soranzo
Romane LIBOUBAN
Deepti Varshney
Niall Beard
Jasper Ouwerkerk
Miaomiao Zhou
Nathan Dunn
Erwan Corre
Vesselin Baev
Anna Syme
Tristan Reynolds
Twishi Gulati
Helena Rasche
Ekaterina Polkh
Jonathan Kreplak
Gildas Le Corguillé
Simon Gladman
Bérénice Batut
Funding
These individuals or organisations provided funding support for the development of this resource
