Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Miaomiao Zhou
Bérénice Batut
Jonathan Kreplak
Niall Beard
Delphine Lariviere
Bazante Sanders
Erwan Corre
Maria Doyle
Mateo Boudet
Helena Rasche
Paul Zierep
Niklas Mayle
Ekaterina Polkh
Anna Syme
Saskia Hiltemann
Hélène Chiapello
William Durand
Anton Nekrutenko
Twishi Gulati
Cristóbal Gallardo
Valentin Loux
Nathan Dunn
Anthony Bretaudeau
Tristan Reynolds
Teresa Müller
Torsten Seemann
Simon Bray
Björn Grüning
Gildas Le Corguillé
Deepti Varshney
Romane LIBOUBAN
Simon Gladman
Esteban Perez-Wohlfeil
Nicola Soranzo
Guillaume Gautreau
Anika Erxleben
Laura Leroi
Saim Momin
Felicitas Kindel
Kenji Fujihara
Alexandre Cormier
Jasper Ouwerkerk
Stéphanie Robin
Funding
These individuals or organisations provided funding support for the development of this resource
