Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Essential genes detection with Transposon insertion sequencing | |||||
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Teresa Müller
Nicola Soranzo
Saim Momin
Paul Zierep
Romane LIBOUBAN
Niklas Mayle
Erwan Corre
Alexandre Cormier
Valentin Loux
Deepti Varshney
Jasper Ouwerkerk
Bérénice Batut
Anthony Bretaudeau
Tristan Reynolds
Gildas Le Corguillé
Maria Doyle
Anna Syme
Ekaterina Polkh
Cristóbal Gallardo
Simon Bray
Guillaume Gautreau
Laura Leroi
Mateo Boudet
Saskia Hiltemann
William Durand
Esteban Perez-Wohlfeil
Jonathan Kreplak
Twishi Gulati
Miaomiao Zhou
Niall Beard
Björn Grüning
Delphine Lariviere
Simon Gladman
Nathan Dunn
Anika Erxleben
Helena Rasche
Bazante Sanders
Torsten Seemann
Felicitas Kindel
Stéphanie Robin
Kenji Fujihara
Hélène Chiapello
Anton Nekrutenko
Funding
These individuals or organisations provided funding support for the development of this resource
