Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Simon Gladman

Miaomiao Zhou

Teresa Müller

Anika Erxleben

Torsten Seemann

Mateo Boudet

Anna Syme

Hélène Chiapello

Deepti Varshney

Anton Nekrutenko

Laura Leroi

Kenji Fujihara

Jasper Ouwerkerk

Helena Rasche

Anthony Bretaudeau

Nathan Dunn

Twishi Gulati

Bazante Sanders

Gildas Le Corguillé

Tristan Reynolds

Björn Grüning

Simon Bray

Stéphanie Robin

William Durand

Saskia Hiltemann

Delphine Lariviere

Ekaterina Polkh

Romane LIBOUBAN

Bérénice Batut

Niall Beard

Cristóbal Gallardo

Valentin Loux

Felicitas Kindel

Guillaume Gautreau

Jonathan Kreplak

Esteban Perez-Wohlfeil

Erwan Corre

Alexandre Cormier

Nicola Soranzo

Maria Doyle

Paul Zierep

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

The University of Melbourne

Australian BioCommons

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

Avans

Melbourne Bioinformatics

IFB