Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

William Durand

Twishi Gulati

Esteban Perez-Wohlfeil

Anton Nekrutenko

Torsten Seemann

Hélène Chiapello

Delphine Lariviere

Niall Beard

Bazante Sanders

Maria Doyle

Anika Erxleben

Alexandre Cormier

Nathan Dunn

Saskia Hiltemann

Felicitas Kindel

Romane LIBOUBAN

Ekaterina Polkh

Gildas Le Corguillé

Simon Bray

Jonathan Kreplak

Cristóbal Gallardo

Anna Syme

Erwan Corre

Jasper Ouwerkerk

Kenji Fujihara

Teresa Müller

Helena Rasche

Björn Grüning

Deepti Varshney

Laura Leroi

Miaomiao Zhou

Valentin Loux

Paul Zierep

Simon Gladman

Anthony Bretaudeau

Stéphanie Robin

Bérénice Batut

Mateo Boudet

Guillaume Gautreau

Nicola Soranzo

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Avans

IFB

ABRomics