Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Erwan Corre

Hélène Chiapello

Twishi Gulati

Valentin Loux

Romane LIBOUBAN

Paul Zierep

Jonathan Kreplak

Delphine Lariviere

Ekaterina Polkh

Guillaume Gautreau

Simon Bray

Simon Gladman

Gildas Le Corguillé

Miaomiao Zhou

William Durand

Bazante Sanders

Anton Nekrutenko

Helena Rasche

Stéphanie Robin

Björn Grüning

Felicitas Kindel

Torsten Seemann

Niall Beard

Esteban Perez-Wohlfeil

Laura Leroi

Anna Syme

Maria Doyle

Deepti Varshney

Mateo Boudet

Anthony Bretaudeau

Jasper Ouwerkerk

Bérénice Batut

Nicola Soranzo

Teresa Müller

Alexandre Cormier

Nathan Dunn

Kenji Fujihara

Cristóbal Gallardo

Saskia Hiltemann

Anika Erxleben

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

IFB

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

Avans

ELIXIR Europe