Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Bérénice Batut

Paul Zierep

Anika Erxleben

Laura Leroi

Nathan Dunn

Esteban Perez-Wohlfeil

Twishi Gulati

Deepti Varshney

Maria Doyle

Gildas Le Corguillé

Anna Syme

Nicola Soranzo

Ekaterina Polkh

Anton Nekrutenko

Bazante Sanders

Cristóbal Gallardo

Torsten Seemann

William Durand

Stéphanie Robin

Miaomiao Zhou

Alexandre Cormier

Jasper Ouwerkerk

Jonathan Kreplak

Anthony Bretaudeau

Kenji Fujihara

Niall Beard

Simon Gladman

Simon Bray

Saskia Hiltemann

Björn Grüning

Erwan Corre

Teresa Müller

Romane LIBOUBAN

Felicitas Kindel

Mateo Boudet

Helena Rasche

Delphine Lariviere

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

IFB