Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Nathan Dunn

Jasper Ouwerkerk

Guillaume Gautreau

Alexandre Cormier

Romane LIBOUBAN

Esteban Perez-Wohlfeil

Bérénice Batut

Mateo Boudet

Stéphanie Robin

Miaomiao Zhou

Laura Leroi

Valentin Loux

Deepti Varshney

Gildas Le Corguillé

Felicitas Kindel

Anthony Bretaudeau

Delphine Lariviere

Kenji Fujihara

Hélène Chiapello

Saskia Hiltemann

Erwan Corre

Cristóbal Gallardo

Anika Erxleben

Ekaterina Polkh

Helena Rasche

Björn Grüning

Simon Gladman

Twishi Gulati

William Durand

Anna Syme

Niall Beard

Anton Nekrutenko

Bazante Sanders

Torsten Seemann

Simon Bray

Jonathan Kreplak

Nicola Soranzo

Teresa Müller

Paul Zierep

Maria Doyle

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

IFB

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.