Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Histories
Managing your analysis histories efficiently
| Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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| Understanding Galaxy history system |
Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
| Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Name tags for following complex histories
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| Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| InterMine integration with Galaxy | |||
| JupyterLab in Galaxy | |||
| RStudio in Galaxy | |||
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Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
| Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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| Exporting to Onedata remote |
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings |
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Accessing IIIF from within Galaxy
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| Getting started with Onedata distributed storage | |||
| Submitting sequence data to ENA |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson
Delphine Lariviere
Teresa Müller
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Anthony Bretaudeau
Deepti Varshney
Armin Dadras
Nic Herndon
Pavankumar Videm
Helena Rasche
Yvan Le Bras
Björn Grüning
Enis Afgan
Bérénice Batut
Anton Nekrutenko
Teresa Müller
Nate Coraor
Fotis E. Psomopoulos
Bartosz Walkowicz
Niall Beard
Marius van den Beek
Yo Yehudi
Anup Kumar
Adelaide Rhodes
Daniela Butano
Miguel Roncoroni
Charles Overbeck
Cristóbal Gallardo
Aysam Guerler
Jon Trow
Delphine Lariviere
Nadia Goué
Avani Khadilkar
Ekaterina Polkh
Toby Hodges
Daniela Schneider
Simon Bray
Simon Gladman
Clea Siguret
Rita Gautschy
Lucille Delisle
Lisanna Paladin
Boris Depoortere
Martin Čech
Łukasz Opioła
Wolfgang Maier
John Chilton
Dave Clements
Ahmed Hamid Awan
Mateusz Kuzak
Laila Los
Nicola Soranzo
William Durand
Elizabeth Sheets
Anne Pajon
Wendi Bacon
Bert Droesbeke
Maria Doyle
Gildas Le Corguillé
Anne Fouilloux
Saskia Hiltemann
Funding
These individuals or organisations provided funding support for the development of this resource
