Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Creation of an interactive Galaxy tools table for your community
Community SIG
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

orcid logoJohan Gustafsson avatar Johan GustafssonYouri Hoogstrate avatar Youri HoogstrateStéphanie Legras avatar Stéphanie LegrasLain Pavot avatar Lain PavotRoss Lazarus avatar Ross LazarusErik Schill avatar Erik SchillHervé Ménager avatar Hervé Ménagerorcid logoPaul Zierep avatar Paul ZierepDave B. avatar Dave B.Clare Sloggett avatar Clare Sloggettorcid logoClemens Blank avatar Clemens Blankorcid logoJohn Chilton avatar John ChiltonGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSaskia Hiltemann avatar Saskia HiltemannMatthias Bernt avatar Matthias Berntorcid logoMartin Čech avatar Martin Čechorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJohn Davis avatar John DavisAysam Guerler avatar Aysam Guerlerorcid logoNicola Soranzo avatar Nicola SoranzoAssunta DeSanto avatar Assunta DeSantoorcid logoCameron Hyde avatar Cameron Hydeorcid logoBérénice Batut avatar Bérénice BatutNitesh Turaga avatar Nitesh Turagaorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruLoraine Guéguen avatar Loraine GuéguenCyril Monjeaud avatar Cyril MonjeaudSimon Bray avatar Simon BrayEstelle Ancelet avatar Estelle Anceletorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoHelena Rasche avatar Helena Rascheorcid logoYvan Le Bras avatar Yvan Le BrasDannon Baker avatar Dannon Baker

Funding

These individuals or organisations provided funding support for the development of this resource