Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

  Community Matrix Chat

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Nitesh Turaga avatar Nitesh TuragaGildas Le Corguillé avatar Gildas Le CorguilléLain Pavot avatar Lain PavotSimon Bray avatar Simon Brayorcid logoBjörn Grüning avatar Björn Grüningorcid logoClemens Blank avatar Clemens Blankorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMartin Čech avatar Martin ČechCyril Monjeaud avatar Cyril Monjeaudorcid logoPaul Zierep avatar Paul ZierepRoss Lazarus avatar Ross LazarusMatthias Bernt avatar Matthias Berntorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoAlex Ostrovsky avatar Alex OstrovskyClare Sloggett avatar Clare Sloggettorcid logoBérénice Batut avatar Bérénice BatutAssunta DeSanto avatar Assunta DeSantoorcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi BaconStéphanie Legras avatar Stéphanie LegrasDave B. avatar Dave B.orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoNate Coraor avatar Nate CoraorNiall Beard avatar Niall Beardorcid logoArmin Dadras avatar Armin Dadrasorcid logoŁukasz Opioła avatar Łukasz OpiołaErik Schill avatar Erik SchillMarie Josse avatar Marie JosseHervé Ménager avatar Hervé MénagerAysam Guerler avatar Aysam Guerlerorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoJohn Chilton avatar John ChiltonDannon Baker avatar Dannon BakerLoraine Guéguen avatar Loraine Guéguenorcid logoJohn Davis avatar John Davisorcid logoCristóbal Gallardo avatar Cristóbal GallardoYouri Hoogstrate avatar Youri HoogstrateWilliam Durand avatar William Durandorcid logoCameron Hyde avatar Cameron HydeEstelle Ancelet avatar Estelle Anceletorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuru

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
de.NBI
Logo
UFR
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
ELIXIR Europe