Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

orcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoWendi Bacon avatar Wendi Baconorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruDannon Baker avatar Dannon BakerErik Schill avatar Erik Schillorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoSaskia Hiltemann avatar Saskia HiltemannCyril Monjeaud avatar Cyril Monjeaudorcid logoJohn Chilton avatar John ChiltonSimon Bray avatar Simon BrayStéphanie Legras avatar Stéphanie LegrasGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBjörn Grüning avatar Björn GrüningAysam Guerler avatar Aysam GuerlerYouri Hoogstrate avatar Youri Hoogstrateorcid logoCameron Hyde avatar Cameron Hydeorcid logoNate Coraor avatar Nate Coraororcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCristóbal Gallardo avatar Cristóbal GallardoMarie Josse avatar Marie Josseorcid logoYvan Le Bras avatar Yvan Le BrasHervé Ménager avatar Hervé MénagerRoss Lazarus avatar Ross Lazarusorcid logoJohn Davis avatar John Davisorcid logoClemens Blank avatar Clemens BlankLoraine Guéguen avatar Loraine GuéguenAssunta DeSanto avatar Assunta DeSantoNitesh Turaga avatar Nitesh TuragaEstelle Ancelet avatar Estelle AnceletNiall Beard avatar Niall Beardorcid logoMartin Čech avatar Martin Čechorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoPaul Zierep avatar Paul ZierepMatthias Bernt avatar Matthias BerntWilliam Durand avatar William Durandorcid logoArmin Dadras avatar Armin DadrasDave B. avatar Dave B.orcid logoBérénice Batut avatar Bérénice BatutLain Pavot avatar Lain Pavotorcid logoHelena Rasche avatar Helena RascheClare Sloggett avatar Clare Sloggett

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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de.NBI
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.