Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Contributors

This material was contributed to by:

Clare Sloggett avatar Clare SloggettGildas Le Corguillé avatar Gildas Le CorguilléAssunta DeSanto avatar Assunta DeSantoStéphanie Legras avatar Stéphanie Legrasorcid logoJohn Davis avatar John DavisWilliam Durand avatar William DurandErik Schill avatar Erik SchillMatthias Bernt avatar Matthias BerntDave B. avatar Dave B.orcid logoArmin Dadras avatar Armin Dadrasorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoBjörn Grüning avatar Björn Grüningorcid logoMartin Čech avatar Martin Čechorcid logoWendi Bacon avatar Wendi Baconorcid logoHelena Rasche avatar Helena RascheLain Pavot avatar Lain Pavotorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoClemens Blank avatar Clemens BlankLoraine Guéguen avatar Loraine Guéguenorcid logoBérénice Batut avatar Bérénice BatutEstelle Ancelet avatar Estelle Anceletorcid logoPaul Zierep avatar Paul ZierepMarie Josse avatar Marie JosseSimon Bray avatar Simon Brayorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoNate Coraor avatar Nate CoraorDannon Baker avatar Dannon BakerRoss Lazarus avatar Ross Lazarusorcid logoJohan Gustafsson avatar Johan GustafssonHervé Ménager avatar Hervé MénagerCyril Monjeaud avatar Cyril MonjeaudNiall Beard avatar Niall Beardorcid logoNicola Soranzo avatar Nicola SoranzoAysam Guerler avatar Aysam Guerlerorcid logoSaskia Hiltemann avatar Saskia HiltemannYouri Hoogstrate avatar Youri Hoogstrateorcid logoCameron Hyde avatar Cameron Hydeorcid logoJohn Chilton avatar John ChiltonNitesh Turaga avatar Nitesh Turaga

Funding

These individuals or organisations provided funding support for the development of this resource