Anne Fouilloux

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Climate

Tutorials

• Introduction to Galaxy Analyses / Galaxy Basics for everyone ✍️ 🧐
• Introduction to Galaxy Analyses / How to reproduce published Galaxy analyses ✍️
• Imaging / Voronoi segmentation ✍️
• Imaging / Nucleoli segmentation and feature extraction using CellProfiler 🧐
• Using Galaxy and Managing your Data / JupyterLab in Galaxy ✍️ 🧐
• Transcriptomics / RNA Seq Counts to Viz in R 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️
• Ecology / Metabarcoding/eDNA through Obitools 🧐
• Galaxy Server administration / Galaxy Monitoring with gxadmin 🧐
• Galaxy Server administration / Use Apptainer containers for running Galaxy jobs 🧐
• Sequence analysis / Quality Control 🧐
• Climate / Getting your hands-on climate data ✍️ 🧐
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools ✍️ 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab ✍️ 🧐
• Climate / Visualize Climate data with Panoply netCDF viewer ✍️ 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) ✍️ 🧐
• Climate / Collaboration with JupyterGIS ✍️ 🧐
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray ✍️ 🧐

Slides

• Introduction to Galaxy Analyses / Introduction to Galaxy ✍️ 🧐
• Imaging / Nucleoli Segmentation
  &
  Feature Extraction
  using CellProfiler 🧐
• Assembly / De Bruijn Graph Assembly 🧐
• Climate / Introduction to climate data ✍️ 🧐
• Climate / Pangeo ecosystem 101 for everyone ✍️ 🧐
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) ✍️ 🧐
• Climate / The Pangeo ecosystem ✍️ 🧐

FAQs

• Results may vary
• Detecting the datatype (file format)
• Find all Histories and purge (aka permanently delete)
• Launch JupyterLab
• Opening the workflow editor

Video Recordings

• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 💬
• Introduction to Galaxy Analyses / Galaxy Basics for everyone 🗣
• Using Galaxy and Managing your Data / Using dataset collections 💬
• Climate / Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools 💬 🗣
• Climate / Functionally Assembled Terrestrial Ecosystem Simulator (FATES) 🗣
• Climate / Collaboration with JupyterGIS 💬 🗣
• Climate / Pangeo Notebook in Galaxy - Introduction to Xarray 💬 🗣
• Foundations of Data Science / R basics in Galaxy 💬

Events

• Galaxy Training Academy 2025 🧑‍🏫

GitHub Activity

github Issues Reported

21 Merged Pull Requests

See all of the github Pull Requests and github Commits by Anne Fouilloux.

• Voronoi Segmentation for different scientific disciplines (bioimaging & Earth Observation)
  imaging
• add subtopics for climate
  climate
• fix Getting your hands on climate
  climate
• address formatting issues with jupytergis: fix #5929
  climate
• fix missing dataset FAQs

Reviewed 41 PRs

We love our community reviewing each other's work!

• Added note regarding the timeseries plot
  climate
• [Google Form] New Recording Submission! - Collaboration with JupyterGIS - annefou
  climate
  GTA
• Event page gta added Climat track
  template-and-tools
• JupyterGIS collaborative features tutorial
  template-and-tools
  climate
• Tutorial added to ecology folder: "Visualization of Climate Data using NetCDF Xarray Map Plotting"

External Links

Favourite Topics

Favourite Formats