Deepti Varshney
Affiliations
UFR
ELIXIR EuropeContributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 🧐
- Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
- Microbiome / 16S Microbial analysis with Nanopore data 🧐
- Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
- Microbiome / Binning of metagenomic sequencing data 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Assembly / Chloroplast genome assembly 🧐
- Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
- Assembly / Large genome assembly and polishing 🧐
- Assembly / Decontamination of a genome assembly 🧐
- Assembly / ERGA post-assembly QC 🧐
- Sequence analysis / NCBI BLAST+ against the MAdLand ✍️ 🧐
- Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
- Genome Annotation / Identification of AMR genes in an assembled bacterial genome 🧐
- Genome Annotation / From small to large-scale genome comparison 🧐
