Plants

Set of tutorials from various topics that use plant datasets for analysis

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
plants nanopore jbrowse1
ERGA post-assembly QC
plants animals genome assembly QC
Large genome assembly and polishing
assembly polishing nanopore plants

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison
plants prokaryote

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
NCBI BLAST+ against the MAdLand
plants

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana
miRNA plants stress tolerance

Editorial Board

This material is reviewed by our Editorial Board:

Deepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal GallardoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoSabrina Zander avatar Sabrina Zanderorcid logoAnna Syme avatar Anna SymeEsteban Perez-Wohlfeil avatar Esteban Perez-WohlfeilStella Eggels avatar Stella Eggelsorcid logoMartin Kuhl avatar Martin Kuhlorcid logoKevin Frey avatar Kevin Freyorcid logoBjörn Grüning avatar Björn Grüningorcid logoDelphine Lariviere avatar Delphine LariviereMehmet Tekman avatar Mehmet TekmanFabian Recktenwald avatar Fabian Recktenwaldorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoHelena Rasche avatar Helena Rascheorcid logoCristina Martins Rodrigues avatar Cristina Martins Rodriguesorcid logoTom Brown avatar Tom Brownorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoDominik Brilhaus avatar Dominik Brilhaus

Funding

These individuals or organisations provided funding support for the development of this resource

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DataPLANT
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DFG
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MAdLand