Statistics and machine learning

Statistical Analyses for omics data and machine learning using Galaxy tools

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
Age prediction using machine learning
Basics of machine learning
Classification in Machine Learning
Clustering in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
Image classification in Galaxy with fruit 360 dataset
Interval-Wise Testing for omics data
Introduction to Machine Learning using R
Introduction to deep learning
Machine learning: classification and regression
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
Regression in Machine Learning
Supervised Learning with Hyperdimensional Computing
Text-mining with the SimText toolset
Train and Test a Deep learning image classifier with Galaxy-Ludwig

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates rss-feed with our RSS Feed

Editorial Board

This material is reviewed by our Editorial Board:

Marzia A Cremona avatar Marzia A Cremona orcid logoFabio Cumbo avatar Fabio Cumbo Anup Kumar avatar Anup Kumar

Contributors

This material was contributed to by:

orcid logoBert Droesbeke avatar Bert Droesbeke Anup Kumar avatar Anup Kumar orcid logoAnthony Bretaudeau avatar Anthony Bretaudeau orcid logoMarie Gramm avatar Marie Gramm Vijay avatar Vijay Daniel Sobral avatar Daniel Sobral Ekaterina Polkh avatar Ekaterina Polkh Simon Bray avatar Simon Bray orcid logoMichelle Terese Savage avatar Michelle Terese Savage Kaivan Kamali avatar Kaivan Kamali Mélanie Petera avatar Mélanie Petera Niall Beard avatar Niall Beard Marzia A Cremona avatar Marzia A Cremona orcid logoNicola Soranzo avatar Nicola Soranzo Gildas Le Corguillé avatar Gildas Le Corguillé orcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra Junior Teresa Müller avatar Teresa Müller Dennis Lal group avatar Dennis Lal group orcid logoSaskia Hiltemann avatar Saskia Hiltemann orcid logoBérénice Batut avatar Bérénice Batut orcid logoHelena Rasche avatar Helena Rasche orcid logoFabio Cumbo avatar Fabio Cumbo orcid logoMartin Čech avatar Martin Čech orcid logoJunhao Qiu avatar Junhao Qiu orcid logoDaniel Blankenberg avatar Daniel Blankenberg orcid logoNate Coraor avatar Nate Coraor orcid logoAlireza Khanteymoori avatar Alireza Khanteymoori orcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulos orcid logoJeremy Goecks avatar Jeremy Goecks orcid logoBjörn Grüning avatar Björn Grüning Enis Afgan avatar Enis Afgan

Funding

These individuals or organisations provided funding support for the development of this resource