Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS analysis with the metaMS package
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

orcid logoMaxim Skoryk avatar Maxim Skorykorcid logoMatej Troják avatar Matej Trojákorcid logoYann Guitton avatar Yann GuittonJulien Saint-Vanne avatar Julien Saint-VanneJean-François Martin avatar Jean-François Martinorcid logoMelanie Föll avatar Melanie FöllSimon Bray avatar Simon Brayorcid logoBjörn Grüning avatar Björn GrüningMaren Stillger avatar Maren Stillgerorcid logoJulia Jakiela avatar Julia JakielaCécile Canlet avatar Cécile CanletWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamorcid logoBérénice Batut avatar Bérénice Batutorcid logoKristina Gomoryova avatar Kristina Gomoryovaorcid logoHelge Hecht avatar Helge HechtSimeon Schum avatar Simeon SchumMélanie Petera avatar Mélanie Peteraorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal GallardoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR
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RFMF
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MetaboHUB