Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS analysis with the metaMS package
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Maren Stillger avatar Maren Stillgerorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal GallardoSimeon Schum avatar Simeon Schumorcid logoSaskia Hiltemann avatar Saskia HiltemannGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMatej Troják avatar Matej TrojákMélanie Petera avatar Mélanie Peteraorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMelanie Föll avatar Melanie Föllorcid logoYann Guitton avatar Yann GuittonSimon Bray avatar Simon Brayorcid logoBérénice Batut avatar Bérénice BatutJean-François Martin avatar Jean-François MartinWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamJulien Saint-Vanne avatar Julien Saint-Vanneorcid logoHelge Hecht avatar Helge Hechtorcid logoKristina Gomoryova avatar Kristina Gomoryovaorcid logoBjörn Grüning avatar Björn GrüningCécile Canlet avatar Cécile Canlet

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR
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RFMF
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MetaboHUB