Metabolomics — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Melanie Föll

Gildas Le Corguillé

Mélanie Petera

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	Done ✅ (3 members)	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Pending ❌	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (4 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.
Review Feedback Received	Ongoing 🔁	Review all feedback received for the Metabolomics topic and create GitHub issues or PRs where needed.
Review open Pull Requests	Ongoing 🔁	View all open PRs in the Metabolomics topic and review, comment and merge!
Review open GitHub Issues	Ongoing 🔁	View all open issues related to the Metabolomics topic and comment, fix, or ask others for help!

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Data on Zenodo
Introduction to Metabolomics	❌		✅
Mass spectrometry imaging: Examining the spatial distribution of analytes	✅		✅
Mass spectrometry imaging: Finding differential analytes	❌	✅	✅
Mass spectrometry: GC-MS analysis with the metaMS package	✅	✅	✅
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	✅	✅	✅
Mass spectrometry: LC-MS analysis	✅		✅
Mass spectrometry: LC-MS data processing	✅		✅
Mass spectrometry: LC-MS preprocessing with XCMS	✅		✅
Molecular formula assignment and mass recalibration with MFAssignR package	✅	✅	✅
Predicting EI+ mass spectra with QCxMS	✅	✅	✅

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
Mass spectrometry imaging: Examining the spatial distribution of analytes	MSI Workflow: spatial distribution	Sep 25, 2026	1	❌	❌	❌
Mass spectrometry imaging: Finding differential analytes	MSI Finding Diff Analytes	Sep 25, 2026	4	❌	❌	❌
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	GC MS using XCMS	Sep 25, 2026	2	✅	❌	❌
Mass spectrometry: LC-MS analysis	Workflow Constructed From History 'imported: testpourGCC'	Sep 25, 2026	4	❌	❌	❌
Molecular formula assignment and mass recalibration with MFAssignR package	Molecular formula assignment and recalibration with MFAssignR package.	Sep 25, 2026	1	✅	✅	✅
Predicting EI+ mass spectra with QCxMS	End-to-end EI+ mass spectra prediction workflow using QCxMS	Sep 25, 2026	1	✅	✅	✅

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
Filter1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/2.6.0.0	2.6.0.0	Missing	2.6.0.0	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	2.6.0.0	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.6.0.0	2.6.0.0	Missing	2.6.0.0	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	2.6.0.0	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0	2.6.0.0	Missing	2.10.0.0, 2.6.0.2, 2.4.0.0, 1.12.1.2, 2.6.0.1, 3.4.3+galaxy0	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	1.12.1.2, 2.6.0.1, 3.4.3+galaxy0	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.2	2.6.0.2	Missing	2.6.0.2	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	1.12.1.2, 2.6.0.1, 3.4.3+galaxy0	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/2.6.0.1	2.6.0.1	Missing	2.6.0.1	3.4.3+galaxy0, 2.10.0.0	Missing	3.4.3+galaxy0, 2.10.0.0	2.6.0.1	2.4.0.1, 2.10.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/2.6.0.0	2.6.0.0	Missing	2.10.0.0, 2.6.0.1, 2.6.0.2, 1.12.1.3, 2.6.0.3, 3.4.3+galaxy0	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	2.6.0.0	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/2.6.0.3	2.6.0.3	Missing	2.6.0.3	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	2.6.0.1, 2.6.0.0, 3.4.3+galaxy0	2.4.0.0

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
Filter1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Grep1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Summary_Statistics1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/join_files_on_column_fuzzy/join_files_on_column_fuzzy/1.0.1	1.0.1	Missing	1.0.1	1.0.1	1.0.1	1.0.1	1.0.1	1.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.3	1.12.1.3	Missing	1.12.1.3	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	1.12.1.3	2.4.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/1.12.1.3	1.12.1.3	Missing	2.10.0.0, 2.4.0.1, 3.4.3+galaxy0, 2.2.6.0, 2.6.0.0, 2.6.0.1	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	1.12.1.3	2.4.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2	1.12.1.2	Missing	1.12.1.2	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	1.12.1.2	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_preprocessing/cardinal_preprocessing/1.12.1.3	1.12.1.3	Missing	1.12.1.3	2.10.0.0, 3.4.3+galaxy0, 2.10.0.1	Missing	3.4.3+galaxy0, 2.10.0.1	1.12.1.3	2.4.0.2
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.3	1.12.1.3	Missing	1.12.1.4, 3.4.3+galaxy0, 2.6.0.1, 2.10.0.0	3.4.3+galaxy0, 2.10.0.0	Missing	3.4.3+galaxy0, 2.10.0.0	1.12.1.3	2.4.0.1, 2.10.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.3	1.12.1.3	Missing	1.12.1.3	2.10.0.0, 3.4.3+galaxy0	Missing	2.10.0.0, 3.4.3+galaxy0	1.12.1.3	2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.4	1.18.0.4	Missing	1.22.0.0, 1.18.0.6, 1.18.0.5	1.22.0.0, 1.18.0.6	Missing	1.22.0.0	1.18.0.4	1.18.0.6
toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_preprocessing/maldi_quant_preprocessing/1.18.0.3	1.18.0.3	Missing	1.18.0.3	1.18.0.3	Missing	1.22.0.0	1.18.0.3	1.18.0.3

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.16.1+galaxy0	2.16.1+galaxy0	2.16.1+galaxy0	2.8.2.1	2.16.1+galaxy0	2.16.1+galaxy3, 2.16.1+galaxy4	2.16.1+galaxy0	2.16.1+galaxy0	2.8.2.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.12.0+galaxy3	3.12.0+galaxy3	3.12.0+galaxy3	3.4.4.0	3.12.0+galaxy3	Missing	3.12.0+galaxy3	Missing	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.12.0+galaxy3	3.12.0+galaxy3	3.12.0+galaxy3	3.4.4.0	3.12.0+galaxy3	3.12.0+galaxy3	3.12.0+galaxy3	3.12.0+galaxy3	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1
toolshed.g2.bx.psu.edu/repos/yguitton/metams_rungc/metams_runGC/3.0.0+metaMS1.24.0-galaxy0	3.0.0+metaMS1.24.0-galaxy0	3.0.0+metaMS1.24.0-galaxy0	Missing	3.0.0+metaMS1.24.0-galaxy0	3.0.0+metaMS1.24.0-galaxy0	3.0.0+metaMS1.24.0-galaxy0	Missing	2.1.1

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.20287.2	3.0.20287.2	3.0.20287.2	3.0.20287.2	3.0.20287.2	3.0.20287.2	3.0.20287.2	3.0.20287.7, 3.0.26121.8, 3.0.26121.7	3.0.26121.7, 3.0.19052.1
toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.16.1+galaxy0	2.16.1+galaxy0	2.16.1+galaxy0	2.8.2.1	2.16.1+galaxy0	2.16.1+galaxy3, 2.16.1+galaxy4	2.16.1+galaxy0	2.16.1+galaxy0	2.8.2.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1
toolshed.g2.bx.psu.edu/repos/recetox/matchms_filtering/matchms_filtering/0.17.0+galaxy0	0.17.0+galaxy0	0.17.0+galaxy0	0.27.0+galaxy0, 0.30.2+galaxy0, 0.33.1+galaxy0, 0.20.0+galaxy0	0.17.0+galaxy0	Missing	0.30.2+galaxy0, 0.25.0+galaxy1, 0.20.0+galaxy0	Missing	Missing
toolshed.g2.bx.psu.edu/repos/recetox/matchms_formatter/matchms_formatter/0.20.0+galaxy0	0.20.0+galaxy0	0.25.0+galaxy0, 0.33.1+galaxy0, 0.27.0+galaxy0, 0.30.2+galaxy0, 0.1.4	0.20.0+galaxy0	0.20.0+galaxy0	Missing	0.20.0+galaxy0	0.20.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/matchms_similarity/matchms_similarity/0.20.0+galaxy0	0.20.0+galaxy0	Missing	0.20.0+galaxy0	0.22.0+galaxy2	Missing	0.20.0+galaxy0	0.20.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy2	1.2.4+galaxy2	1.2.4+galaxy2	1.3.1+galaxy0, 1.3.0+galaxy1, 1.3.0+galaxy7	1.2.4+galaxy2	Missing	1.3.1+galaxy0, 1.3.0+galaxy1, 1.3.0+galaxy7	1.2.4+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy0	1.3.0+galaxy0	1.2.4+galaxy2, 1.3.1+galaxy0, 1.3.0+galaxy7	1.3.1+galaxy0, 1.3.0+galaxy1, 1.3.0+galaxy7	1.3.0+galaxy0	Missing	1.3.1+galaxy0, 1.3.0+galaxy1, 1.3.0+galaxy7	1.2.4+galaxy2, 1.3.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr_define_experiment/ramclustr_define_experiment/1.0.2	1.0.2	1.0.2	1.0.2+galaxy2, 1.0.2+galaxy0	1.0.2+galaxy2	Missing	1.0.2+galaxy2, 1.0.2+galaxy0	Missing	Missing
toolshed.g2.bx.psu.edu/repos/recetox/riassigner/riassigner/0.3.4+galaxy1	0.3.4+galaxy1	0.3.4+galaxy1	0.4.1+galaxy0, 0.4.1+galaxy1, 0.6.1+galaxy0	0.3.4+galaxy1	Missing	0.4.1+galaxy0, 0.3.4+galaxy2, 0.6.1+galaxy0	0.3.4+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/recetox/waveica/waveica/0.2.0+galaxy2	0.2.0+galaxy2	0.2.0+galaxy2	0.2.1+galaxy10, 0.2.0+galaxy8, 0.2.0+galaxy9, 0.2.0+galaxy10	0.2.1+galaxy10, 0.2.0+galaxy7, 0.2.0+galaxy8, 0.2.0+galaxy6, 0.2.0+galaxy9, 0.2.0+galaxy10, 0.2.0+galaxy4, 0.2.0+galaxy5	Missing	0.2.0+galaxy7, 0.2.0+galaxy9, 0.2.0+galaxy10	Missing	Missing

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8	2.2.8	Missing	2.2.8	2.2.8	Missing	2.2.8	2.2.8	2.2.8
toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/Univariate/2.2.4	2.2.4	2.2.4	2.2.4	2.2.4	2.2.4	2.2.4	2.2.4	2.2.4
toolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/wsdl_hmdb/1.7.6	1.7.6	Missing	1.6.1	1.7.6	Missing	1.7.6	1.7.6	1.6.1
toolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/wsdl_hmdb/2018-10-01	2016-11-28, 1.6.1, 1.7.6	Missing	1.6.1	1.7.6, 1.7.4	Missing	1.6.1, 1.7.6	2018-10-01	1.6.1
toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.4	2.2.4	2.2.7+camera1.48.0-galaxy1, 2.2.6+camera1.48.0-galaxy1, 2.2.6+camera1.48.0-galaxy0, 2.2.7+camera1.48.0-galaxy3	2.2.4	2.2.4	2.2.7+camera1.48.0-galaxy1, 2.2.7+camera1.48.0-galaxy3	2.2.4	2.2.4	2.2.4
toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.7+camera1.48.0-galaxy1	2.2.7+camera1.48.0-galaxy1	2.2.7+camera1.48.0-galaxy1	2.2.4	2.2.7+camera1.48.0-galaxy1	2.2.7+camera1.48.0-galaxy1	2.2.7+camera1.48.0-galaxy1	2.2.7+camera1.48.0-galaxy1	2.2.4
toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.16.1+galaxy2	2.16.1+galaxy2	2.16.1+galaxy2	2.8.2.1	2.16.1+galaxy2	2.16.1+galaxy3, 2.16.1+galaxy4	2.16.1+galaxy2	2.8.2.1, 2.16.1+galaxy0, 2.16.1+galaxy3, 2.16.1+galaxy4	2.8.2.1
toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.8.2.1	2.8.2.1	2.16.1+galaxy2, 2.16.1+galaxy0, 2.16.1+galaxy3, 2.16.1+galaxy4	2.8.2.1	2.8.2.1	2.16.1+galaxy3, 2.16.1+galaxy4	2.16.1+galaxy2, 2.16.1+galaxy0, 2.16.1+galaxy3	2.8.2.1	2.8.2.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.0	3.12.0+galaxy1	Missing	3.12.0+galaxy1	Missing	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.0	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1	3.12.0+galaxy0, 3.12.0+galaxy3, 3.12.0+galaxy4	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.4.4.0	3.4.4.0	3.12.0+galaxy1, 3.12.0+galaxy0, 3.12.0+galaxy3, 3.12.0+galaxy4	3.4.4.0	3.4.4.0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1, 3.12.0+galaxy0, 3.12.0+galaxy3	3.12.0+galaxy0, 3.12.0+galaxy3, 3.12.0+galaxy4	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.0	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1	3.12.0+galaxy3, 3.4.4.0, 3.12.0+galaxy0, 3.12.0+galaxy4	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0	3.4.4.0	3.12.0+galaxy3, 3.12.0+galaxy1, 3.12.0+galaxy0, 3.12.0+galaxy4	3.4.4.0	3.4.4.0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy3, 3.12.0+galaxy1, 3.12.0+galaxy0	3.4.4.0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.0	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1	3.12.0+galaxy3, 3.4.4.0, 3.12.0+galaxy0, 3.12.0+galaxy4	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.4.4.0	3.4.4.0	3.12.0+galaxy1, 3.12.0+galaxy3, 3.12.0+galaxy0, 3.12.0+galaxy4	3.4.4.0	3.4.4.0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1, 3.12.0+galaxy3, 3.12.0+galaxy0	3.4.4.0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.0	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1	3.12.0+galaxy3, 3.4.4.0, 3.12.0+galaxy4	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0	3.4.4.0	3.12.0+galaxy0, 3.12.0+galaxy1, 3.12.0+galaxy3, 3.12.0+galaxy4	3.4.4.0	3.4.4.0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0, 3.12.0+galaxy1, 3.12.0+galaxy3	3.4.4.0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.1	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1	3.12.0+galaxy0, 3.4.4.1, 3.12.0+galaxy3, 3.12.0+galaxy4	3.4.4.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.4.4.1	3.4.4.1	3.12.0+galaxy0, 3.12.0+galaxy3, 3.12.0+galaxy1, 3.12.0+galaxy4	3.4.4.1	3.4.4.1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0, 3.12.0+galaxy3, 3.12.0+galaxy1	3.4.4.1	3.4.4.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/3.12.0+galaxy1	3.12.0+galaxy1	3.12.0+galaxy1	3.4.4.1	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy1	3.12.0+galaxy3, 3.12.0+galaxy0, 3.4.4.1, 3.12.0+galaxy4	3.4.4.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/3.4.4.1	3.4.4.1	3.12.0+galaxy3, 3.12.0+galaxy1, 3.12.0+galaxy0, 3.12.0+galaxy4	3.4.4.1	3.4.4.1	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy3, 3.12.0+galaxy1, 3.12.0+galaxy0	3.4.4.1	3.4.4.1
toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/2.1.2	2.1.2	Missing	2.1.2	2.1.2	Missing	2.1.2	2.1.2	2.1.2
toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0	3.0.0	Missing	2.1.2	3.0.0	Missing	3.0.0	3.0.0	2.1.2
toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/generic_filter/2017.04	2017.04	Missing	2017.06	2020.01, 2017.06	Missing	2020.01, 2017.06	2017.04	2017.06
toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/generic_filter/2020.01	2020.01	Missing	2017.06	2020.01	Missing	2020.01	2020.01	2017.06

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/ethevenot/multivariate/Multivariate/2.3.10	2.3.10	2.3.10	Missing	2.3.10	2.3.10	2.3.10	2.3.10	2.3.10
toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8	2.2.8	Missing	2.2.8	2.2.8	Missing	2.2.8	2.2.8	2.2.8
toolshed.g2.bx.psu.edu/repos/marie-tremblay-metatoul/normalization/normalization/1.0.7	1.0.7	Missing	2.0.1	1.0.7	Missing	2.0.1	Missing	2.0.1
toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/3.0.0	3.0.0	Missing	2.1.2	3.0.0	Missing	3.0.0	3.0.0	2.1.2
toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/generic_filter/2020.01	2020.01	Missing	2017.06	2020.01	Missing	2020.01	2020.01	2017.06
toolshed.g2.bx.psu.edu/repos/melpetera/intensity_checks/intens_check/1.2.8	1.2.1, 1.3.0, 2.0.1	1.2.8	Missing	1.2.8	1.3.0, 2.0.1	1.2.1, 1.3.0, 2.0.1	Missing	1.2.1

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.6+camera1.48.0-galaxy0	2.2.7+camera1.48.0-galaxy1, 2.2.2, 2.2.4, 2.2.0, 2.2.1	2.2.6+camera1.48.0-galaxy0	2.2.4	2.2.6+camera1.48.0-galaxy0	2.2.7+camera1.48.0-galaxy1, 2.2.7+camera1.48.0-galaxy3	2.2.7+camera1.48.0-galaxy1, 2.2.4	2.2.7+camera1.48.0-galaxy1, 2.2.4, 2.2.7+camera1.48.0-galaxy3	2.2.4
toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.16.1+galaxy0	2.16.1+galaxy0	2.16.1+galaxy0	2.8.2.1	2.16.1+galaxy0	2.16.1+galaxy3, 2.16.1+galaxy4	2.16.1+galaxy0	2.16.1+galaxy0	2.8.2.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.12.0+galaxy0	3.4.4.0, 3.12.0+galaxy3, 3.12.0+galaxy1	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	Missing	3.4.4.0, 3.12.0+galaxy3, 3.12.0+galaxy1	Missing	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy3, 3.4.4.0, 3.12.0+galaxy4	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_summary/abims_xcms_summary/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.0	3.12.0+galaxy0	Missing	3.12.0+galaxy0	Missing	3.4.4.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/3.12.0+galaxy0	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1	3.12.0+galaxy0	3.12.0+galaxy3, 3.12.0+galaxy4	3.12.0+galaxy0	3.12.0+galaxy0	3.4.4.1
toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/idchoice/19.12	19.12	19.12	Missing	19.12	Missing	19.12	Missing	18.01
toolshed.g2.bx.psu.edu/repos/melpetera/intensity_checks/intens_check/1.2.8	1.2.1, 1.3.0, 2.0.1	1.2.8	Missing	1.2.8	1.3.0, 2.0.1	1.2.1, 1.3.0, 2.0.1	Missing	1.2.1

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_findrecalseries/mfassignr_findRecalSeries/1.1.2+galaxy1	1.1.2+galaxy1	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	Missing	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_histnoise/mfassignr_histnoise/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy0	Missing	Missing	1.1.2+galaxy0	1.1.2+galaxy0	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_histnoise/mfassignr_kmdnoise/1.1.2+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_isofiltr/mfassignr_isofiltr/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_isofiltr/mfassignr_isofiltr/1.1.2+galaxy0	1.1.2+galaxy1, 1.1.1+galaxy0, 1.0.3+galaxy1, 1.1.1+galaxy1	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.2+galaxy1, 1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_kmdnoise/mfassignr_kmdnoise/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy0	Missing	Missing	1.1.2+galaxy0	1.1.2+galaxy0	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_mfassign/mfassignr_mfassign/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_mfassign/mfassignr_mfassign/1.1.2+galaxy0	1.1.1+galaxy0, 1.1.2+galaxy1, 1.0.3+galaxy0, 1.1.1+galaxy1	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.1+galaxy0, 1.1.2+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_mfassigncho/mfassignr_mfassignCHO/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_mfassigncho/mfassignr_mfassignCHO/1.1.2+galaxy0	1.1.1+galaxy0, 1.0.3+galaxy0, 1.1.1+galaxy1, 1.1.2+galaxy1	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.1+galaxy0, 1.1.2+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_recal/mfassignr_recal/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy0	Missing	Missing	1.1.2+galaxy0	1.1.2+galaxy0	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_recal/mfassignr_recal/1.1.2+galaxy0	1.1.2+galaxy0	1.1.2+galaxy0	Missing	Missing	1.1.2+galaxy0	1.1.2+galaxy0	1.1.2+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_recallist/mfassignr_recallist/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy0	Missing	Missing	1.1.2+galaxy0	1.1.2+galaxy0	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_recallist/mfassignr_recallist/1.1.2+galaxy0	1.1.2+galaxy0	1.1.2+galaxy0	Missing	Missing	1.1.2+galaxy0	1.1.2+galaxy0	1.1.2+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_snplot/mfassignr_snplot/1.1.1+galaxy0	1.1.1+galaxy0	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/recetox/mfassignr_snplot/mfassignr_snplot/1.1.2+galaxy0	1.1.2+galaxy1, 1.1.1+galaxy1, 1.1.1+galaxy0, 1.0.3+galaxy1	1.1.2+galaxy1	Missing	Missing	1.1.2+galaxy1	1.1.2+galaxy1	1.1.2+galaxy1, 1.1.1+galaxy0	Missing

Data as of 2026-09-25 00:18:46 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
__FILTER_FAILED_DATASETS__	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
param_value_from_file	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/ctb_im_conformers/ctb_im_conformers/1.1.4+galaxy0	1.1.4+galaxy0	1.1.4+galaxy0	1.1.4+galaxy0	Missing	Missing	1.1.4+galaxy0	1.1.4+galaxy0	1.1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/3.1.1+galaxy0	3.1.1+galaxy0	3.1.1+galaxy0	3.1.1+galaxy0	Missing	3.1.1+galaxy0	3.1.1+galaxy0	3.1.1+galaxy0	3.1.1+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2	0.5.2	0.5.2	0.5.2	0.5.2	0.5.2	0.5.2	0.5.2	0.5.0, 0.4.0
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	0.1.1, 0.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	1.1.0
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_getres/qcxms_getres/5.2.1+galaxy2	5.2.1+galaxy2	5.2.1+galaxy4, 5.2.1+galaxy3	5.2.1+galaxy2	Missing	5.2.1+galaxy4, 5.2.1+galaxy3	5.2.1+galaxy1, 5.2.1+galaxy4, 5.2.1+galaxy3	5.2.1+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_neutral_run/qcxms_neutral_run/5.2.1+galaxy3	5.2.1+galaxy3	5.2.1+galaxy6, 5.2.1+galaxy7	5.2.1+galaxy6, 5.2.1+galaxy5, 5.2.1+galaxy7, 5.2.1+galaxy4	Missing	5.2.1+galaxy6, 5.2.1+galaxy7	5.2.1+galaxy3	5.2.1+galaxy7, 5.2.1+galaxy4	Missing
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_neutral_run/qcxms_neutral_run/5.2.1+galaxy4	5.2.1+galaxy4	5.2.1+galaxy6, 5.2.1+galaxy7	5.2.1+galaxy4	Missing	5.2.1+galaxy6, 5.2.1+galaxy7	5.2.1+galaxy6, 5.2.1+galaxy7, 5.2.1+galaxy3	5.2.1+galaxy4	Missing
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_production_run/qcxms_production_run/5.2.1+galaxy3	5.2.1+galaxy3	5.2.1+galaxy5, 5.2.1+galaxy4	5.2.1+galaxy3	Missing	5.2.1+galaxy5, 5.2.1+galaxy4	5.2.1+galaxy5, 5.2.1+galaxy2, 5.2.1+galaxy4	5.2.1+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/recetox/xtb_molecular_optimization/xtb_molecular_optimization/6.6.1+galaxy1	6.6.1+galaxy1	Missing	6.7.1+galaxy0, 6.6.1+galaxy3	6.6.1+galaxy1	Missing	6.6.1+galaxy1	6.7.1+galaxy0, 6.6.1+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/recetox/xtb_molecular_optimization/xtb_molecular_optimization/6.6.1+galaxy3	6.6.1+galaxy3	Missing	6.6.1+galaxy3	6.6.1+galaxy3	Missing	6.6.1+galaxy3	6.6.1+galaxy3	Missing

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