Introduction to Galaxy Analyses — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Jennifer Hillman-Jackson

Delphine Lariviere

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	Done ✅ (3 members)	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Done ✅	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (13 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.
Review Feedback Received	Ongoing 🔁	Review all feedback received for the Introduction to Galaxy Analyses topic and create GitHub issues or PRs where needed.
Review open Pull Requests	Ongoing 🔁	View all open PRs in the Introduction to Galaxy Analyses topic and review, comment and merge!
Review open GitHub Issues	Ongoing 🔁	View all open issues related to the Introduction to Galaxy Analyses topic and comment, fix, or ask others for help!

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
Introduction to Galaxy	❌			✅
A short introduction to Galaxy	✅			✅
Galaxy Basics for everyone	✅			✅
Galaxy Basics for genomics	✅			✅
Introduction to Digital Humanities in Galaxy	✅			✅
Introduction to Galaxy as an RDM platform	✅			✅
Very Short Introductions: QC	❌			✅
Data Manipulation Olympics	✅			✅
From peaks to genes	✅			✅
How to reproduce published Galaxy analyses	✅			✅
IGV Introduction	❌			❌
Introduction to Genomics and Galaxy	✅			❌
NGS data logistics	✅			✅
Options for using Galaxy	❌			❌
Best Practices for Citing Galaxy	✅			✅
Introduction to the Dataverse Integration in Galaxy	✅			✅
Upload data to Galaxy	❌			✅

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
A short introduction to Galaxy	Galaxy Intro Short	Jul 1, 2026	5	❌	❌	❌
Galaxy Basics for everyone	GTN Training: Galaxy 101 For Everyone	Jul 1, 2026	8	✅	❌	❌
Galaxy Basics for genomics	Find exons with the highest number of features	Jul 1, 2026	6	✅	✅	❌
Introduction to Digital Humanities in Galaxy	Introduction to DH in Galaxy	Jul 1, 2026	3	✅	✅	❌
Introduction to Galaxy as an RDM platform	Olympic Age Distribution	Jul 1, 2026	1	✅	✅	❌
Data Manipulation Olympics	GTN Tutorial: Data manipulation Olympics - all steps and exercises	Jul 1, 2026	1	❌	❌	❌
From peaks to genes	Galaxy Introduction Peaks2Genes - Part 1	Jul 1, 2026	1	✅	❌	❌
How to reproduce published Galaxy analyses	GTN Training: Galaxy 101 For Everyone	Jul 1, 2026	1	❌	❌	❌
Introduction to Genomics and Galaxy	Galaxy Intro Strands 2	Jul 1, 2026	4	❌	❌	❌
Introduction to Genomics and Galaxy	Galaxy Intro Strands	Jul 1, 2026	4	❌	❌	❌
NGS data logistics	NGS_tutorial	Jul 1, 2026	1	✅	✅	❌

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.1	Missing	Missing	Missing	Missing	Missing	Missing	1.0.2+galaxy2	1.0.0	Missing	Missing	Missing	Missing	Missing	Missing	1.0.2+galaxy2	Missing	Missing	Missing	1.0.2+galaxy2, 1.0.0, 1.0.2, 1.0.2+galaxy0	1.0.1	1.0.2+galaxy2, 1.0.2+galaxy0	1.0.1	1.0.2+galaxy2, 1.0.2, 1.0.2+galaxy0	1.0.2+galaxy0	1.0.1	Missing
toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2+galaxy2	Missing	Missing	Missing	Missing	Missing	Missing	1.0.2+galaxy2	1.0.0	Missing	Missing	Missing	Missing	Missing	Missing	1.0.2+galaxy2	Missing	Missing	Missing	1.0.2+galaxy2	1.0.2+galaxy2	1.0.2+galaxy2	1.0.2+galaxy2	1.0.2+galaxy2	1.0.2+galaxy0	1.0.2+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72	Missing	Missing	Missing	Missing	Missing	0.72	0.74+galaxy0	0.74+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	0.74+galaxy1	Missing	0.72	0.74+galaxy0	0.72	0.72	0.74+galaxy0, 0.74+galaxy1, 0.65, 0.69, 0.68, 0.52, 0.67, 0.64, 0.63, 0.62	0.72	0.72	0.72+galaxy1, 0.73+galaxy0	0.72	Missing
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1	Missing	Missing	Missing	Missing	Missing	0.72, 0.72+galaxy1, 0.73+galaxy0	0.74+galaxy0	0.74+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	0.74+galaxy1	Missing	0.72, 0.72+galaxy1, 0.65, 0.71	0.74+galaxy0	0.74+galaxy1	0.74+galaxy1	0.74+galaxy1	0.74+galaxy1	0.74+galaxy1	0.72+galaxy1, 0.73+galaxy0	0.74+galaxy1	Missing

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Cut1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Grouping1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Remove beginning1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
csv_to_tabular	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	Missing	1.1.0	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	1.8+galaxy0	1.1.0	Missing	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0, 1.9+galaxy0	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.3.5+galaxy0	Missing	Missing	Missing	Missing	Missing	2.2.1+galaxy1, 3.4.0+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	3.4.0+galaxy1, 3.5.1+galaxy2	Missing	Missing	Missing	3.3.5+galaxy0	3.3.5+galaxy0	3.4.0+galaxy1, 3.5.1+galaxy2	3.3.5+galaxy0	3.3.5+galaxy0	3.3.5+galaxy0	3.3.5+galaxy0	Missing
upload1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
comp1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/9.5+galaxy0	Missing	Missing	Missing	Missing	Missing	1.1.0, 9.5+galaxy3	Missing	1.1.0, 9.5+galaxy3, 9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy0	9.5+galaxy0	9.5+galaxy0	9.5+galaxy0	9.5+galaxy0	1.1.0	9.5+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1	Missing	Missing	Missing	Missing	Missing	1.1.1	Missing	1.1.1	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0	Missing	Missing	Missing	Missing	Missing	1.1.1, 9.5+galaxy3	Missing	1.1.1, 9.5+galaxy3, 9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy0	9.5+galaxy0	9.5+galaxy0	9.5+galaxy0	9.5+galaxy0	1.1.1, 1.1.0	9.5+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.31.1+galaxy0	Missing	Missing	Missing	Missing	Missing	2.31.1+galaxy0	2.31.1+galaxy0	2.31.1+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	2.31.1+galaxy0	Missing	Missing	Missing	2.31.1+galaxy0	2.31.1+galaxy0	2.31.1+galaxy0	2.31.1+galaxy0	2.31.1+galaxy0	2.29.2, 2.30.0, 2.19.0	2.31.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0	1.8+galaxy0	1.1.0, 1.9+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0	Missing	Missing	Missing	1.8+galaxy0	1.1.0, 1.9+galaxy0, 1.0.6, 1.1.0+galaxy2	1.8+galaxy0	1.8+galaxy0	1.8+galaxy0	1.1.0, 1.1.0+galaxy1, 1.0.6, 1.1.0+galaxy2	1.8+galaxy0	Missing
upload1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Remove beginning1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.10+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	3.10+galaxy1	3.10+galaxy1	3.10+galaxy1	3.10+galaxy1	Missing	3.6+galaxy1, 3.6+galaxy2, 3.7+galaxy0	3.10+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy2	Missing	Missing	Missing	Missing	Missing	9.5+galaxy3, 1.1.3, 1.1.4	Missing	9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	1.1.3, 1.1.1, 1.1.0	9.5+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.5+galaxy3	Missing	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	1.1.3, 1.1.1, 1.1.0	9.5+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy2	Missing	Missing	Missing	Missing	Missing	1.1.1, 9.5+galaxy3	Missing	9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	1.1.1, 1.1.0	9.5+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.5+galaxy3	Missing	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	1.1.1, 1.1.0	9.5+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy3	Missing	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	1.1.2, 1.1.1, 1.1.0	9.5+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/wordcloud/wordcloud/1.9.6+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	1.9.6+galaxy0	1.9.6+galaxy0	1.9.6+galaxy0	1.9.6+galaxy0	Missing	Missing	Missing	Missing

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Summary_Statistics1	built-in	built-in	Missing	Missing	Missing	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
export_remote	Missing	Missing	Missing	Missing	Missing	built-in	Missing	Missing	Missing	built-in	Missing	Missing	Missing	Missing	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/imagemagick_image_montage/imagemagick_image_montage/7.1.2-2+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	7.1.2-2+galaxy1	7.1.2-2+galaxy1	7.1.2-2+galaxy1	7.1.2-2+galaxy1	Missing	Missing	7.1.2-2+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1	Missing	Missing	Missing	Missing	Missing	2.0, 1.4, 1.2.0, 1.5, 1.3.0, 1.6	Missing	2.1	Missing	Missing	Missing	Missing	Missing	Missing	2.0, 2.1+galaxy0	Missing	Missing	Missing	2.1	2.1	2.0, 1.4, 1.6, 2.1+galaxy0, 1.1.0	2.1	2.1	2.0, 1.4, 1.5, 1.3.0, 1.6, 1.3.1	2.1	Missing
toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/6.0+galaxy3	Missing	Missing	Missing	Missing	Missing	Missing	Missing	6.0+galaxy2	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	6.0+galaxy2, 0.2, 6.0+galaxy0, 6.0+galaxy1, 6.0+galaxy5	6.0+galaxy3	6.0+galaxy3	6.0+galaxy3	6.0+galaxy3	0.2	6.0+galaxy5	Missing
toolshed.g2.bx.psu.edu/repos/iuc/column_remove_by_header/column_remove_by_header/1.0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	1.0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	1.0	1.0	1.0	1.0	1.0	1.0	1.0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_histogram/ggplot2_histogram/3.5.1+galaxy1	Missing	Missing	Missing	Missing	Missing	3.3.5+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	3.5.1+galaxy1	Missing	Missing	Missing	3.5.1+galaxy1	3.5.1+galaxy1	3.5.1+galaxy1	3.5.1+galaxy1	3.5.1+galaxy1	3.3.5+galaxy0, 2.2.1+galaxy0	3.5.1+galaxy1	Missing

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0	Missing	Missing	Missing	Missing	Missing	0.23.2+galaxy0	0.23.2+galaxy0	1.0.1+galaxy3, 1.3.3+galaxy0, 1.0.1+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	1.3.3+galaxy0	Missing	Missing	Missing	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1	Missing	Missing	Missing	Missing	Missing	1.11+galaxy1	Missing	1.11+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	1.34+galaxy0	Missing	Missing	Missing	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy0, 1.7, 1.7.1, 1.8+galaxy0, 1.9+galaxy1, 1.8+galaxy1, 1.9, 1.8+galaxy2	1.11+galaxy1	Missing

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Count1	built-in	built-in	Missing	Missing	Missing	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Cut1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Filter1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Grouping1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Remove beginning1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Show beginning1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
cat1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
join1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
tabular_to_csv	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.4	Missing	Missing	Missing	Missing	Missing	Missing	Missing	0.6	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	0.6	0.4	0.4	0.4	0.4	0.4	0.4	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1	Missing	Missing	Missing	Missing	Missing	0.1.1	Missing	0.1.1	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1	Missing	Missing	Missing	Missing	Missing	1.1.1	Missing	1.1.1	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	Missing	1.1.0	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6	Missing	Missing	Missing	Missing	Missing	1.6	Missing	1.6	Missing	Missing	Missing	Missing	Missing	Missing	2.0, 2.1+galaxy0	Missing	Missing	Missing	1.6	1.6	1.6	1.6	1.6	1.6	1.6	Missing
toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1	Missing	Missing	Missing	Missing	Missing	Missing	1.0.3	1.0.1	Missing	Missing	Missing	Missing	Missing	Missing	1.0.3	Missing	Missing	Missing	1.0.1	1.0.1	1.0.3	1.0.1	1.0.1	1.0.3	1.0.1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	1.8+galaxy0	1.1.0	Missing	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0, 1.9+galaxy0	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0, 1.1.0, 1.9+galaxy0	1.8+galaxy0	1.1.0, 1.9+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0, 1.9+galaxy0	Missing	Missing	Missing	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	Missing
upload1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in
wc_gnu	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
{{version_cat}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_compute}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_count}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_cut_advanced}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_cut_columns}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_datamash}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_filter}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_join}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_paste}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_remove_beginning}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_remove_columns_by_header}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_replace_text_column}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_replace_text_line}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_select_first}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_sort}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_split}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_unique}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
{{version_wc}}	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
CONVERTER_interval_to_bed_0	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Cut1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Grouping1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3	Missing	Missing	Missing	Missing	Missing	1.1.3	Missing	1.1.3	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/9.5+galaxy2	Missing	Missing	Missing	Missing	Missing	9.5+galaxy3, 1.1.3	Missing	9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	1.1.3, 1.1.2, 1.1.1, 1.1.0	9.5+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy2	Missing	Missing	Missing	Missing	Missing	1.1.1, 9.5+galaxy3	Missing	9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	1.1.1, 1.1.0	9.5+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	Missing	1.1.0	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/9.5+galaxy2	Missing	Missing	Missing	Missing	Missing	1.1.0, 9.5+galaxy3	Missing	9.5+galaxy2	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	9.5+galaxy2	1.1.0	9.5+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1	Missing	Missing	Missing	Missing	Missing	2.0, 1.4, 1.2.0, 1.5, 1.3.0, 1.6	Missing	2.1	Missing	Missing	Missing	Missing	Missing	Missing	2.0, 2.1+galaxy0	Missing	Missing	Missing	2.1	2.1	2.0, 1.4, 1.6, 2.1+galaxy0, 1.1.0	2.1	2.1	2.0, 1.4, 1.5, 1.3.0, 1.6, 1.3.1	2.1	Missing
toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	Missing
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	1.0.0	Missing	Missing	Missing	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	Missing
upload1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Cut1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Grouping1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Remove beginning1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
csv_to_tabular	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	Missing	1.1.0	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0	Missing	Missing	Missing	Missing	Missing	1.1.0	1.8+galaxy0	1.1.0	Missing	Missing	Missing	Missing	Missing	Missing	1.8+galaxy0, 1.9+galaxy0	Missing	Missing	Missing	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy1	Missing	Missing	Missing	Missing	Missing	2.2.1+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	3.4.0+galaxy1, 3.5.1+galaxy2	Missing	Missing	Missing	3.4.0+galaxy1, 3.5.1+galaxy2, 3.3.5+galaxy0, 2.2.1+galaxy2, 3.3.5+galaxy1, 3.3.5+galaxy2, 3.4.0+galaxy0	2.2.1+galaxy1	3.4.0+galaxy1, 3.5.1+galaxy2	2.2.1+galaxy1	3.4.0+galaxy1, 3.5.1+galaxy2, 3.3.5+galaxy0, 2.2.1+galaxy2, 3.3.5+galaxy1, 3.3.5+galaxy2, 3.4.0+galaxy0	3.3.5+galaxy0, 2.2.1+galaxy2	2.2.1+galaxy1	Missing
upload1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Filter1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
cat1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
gene2exon1	Missing	built-in	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	Missing	Missing	Missing	Missing	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0	Missing	Missing	Missing	Missing	Missing	0.1.0	Missing	0.1.0	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	0.1.0	0.1.0	0.1.0	0.1.0	0.1.0	0.1.0	0.1.0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy3	Missing	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	9.5+galaxy3	Missing	Missing	Missing	Missing	9.5+galaxy3	Missing	Missing	Missing	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	9.5+galaxy3	1.1.1, 1.1.0	9.5+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	1.0.0	Missing	Missing	Missing	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	Missing

Data as of 2026-07-01 00:35:35 +0000

Tool	APOSTL	MBAC Metabiome Portal	ChemFlow	CIRM-CFBP	Coloc-stats	Galaxy@AuBi	Galaxy@Pasteur	GalaxyTrakr	GASLINI	HyPhy HIV NGS Tools	ImmPort Galaxy	InteractoMIX	IPK Galaxy Blast Suite	Mandoiu Lab	MISSISSIPPI	Oqtans	Palfinder	PepSimili	UseGalaxy.org.au	UseGalaxy.be	UseGalaxy.cz	UseGalaxy.eu	UseGalaxy.fr	UseGalaxy.no	UseGalaxy.org (Main)	Viral Variant Visualizer (VVV)
Filter1	built-in	built-in	Missing	Missing	built-in	built-in	built-in	built-in	built-in	built-in	Missing	Missing	Missing	Missing	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.19	Missing	Missing	Missing	Missing	Missing	0.7.19	0.7.18	0.7.17.4	Missing	Missing	Missing	Missing	Missing	Missing	0.7.19	Missing	Missing	Missing	0.7.19	0.7.19	0.7.19	0.7.19	0.7.19	0.7.17.4, 0.7.17.5, 0.7.17.3	0.7.19	Missing
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.19	Missing	Missing	Missing	Missing	Missing	0.7.19	0.7.18	0.7.17.2	Missing	Missing	Missing	Missing	Missing	Missing	0.7.19	Missing	Missing	Missing	0.7.19	0.7.19	0.7.19	0.7.19	0.7.19	0.7.17.1, 0.7.17.2	0.7.19	Missing
toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/3.1.1.0	Missing	Missing	Missing	Missing	Missing	3.1.1.0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	3.1.1.0	Missing	Missing	Missing	3.1.1.0	3.1.1.0	3.1.1.0	3.1.1.0	3.1.1.0	2.18.2.2	3.1.1.0	Missing
toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.5	Missing	Missing	Missing	Missing	Missing	2.0.5	2.0.4	2.0.8, 2.0.7, 2.0	Missing	Missing	Missing	Missing	Missing	Missing	2.0.5	Missing	Missing	Missing	2.0.5	2.0.5	2.0.5	2.0.5	2.0.5	2.0.2+galaxy2, 2.0.4, 2.0.3	2.0.5	Missing
toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy4	Missing	Missing	Missing	Missing	Missing	2.2.1+galaxy1	Missing	2.3+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	2.2.1+galaxy1, 2.3+galaxy0, 2.2.1+galaxy0	Missing	Missing	Missing	2.2.1+galaxy4	2.2.1+galaxy1, 2.3+galaxy0, 2.2.1+galaxy0	2.2.1+galaxy4	2.2.1+galaxy4	2.2.1+galaxy4	Missing	2.2.1+galaxy4	2.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy4	Missing	Missing	Missing	Missing	Missing	0.20.1+galaxy0, 0.23.2+galaxy0, 1.0.1+galaxy3, 0.19.5+galaxy1, 1.0.1+galaxy2	0.23.2+galaxy0	1.0.1+galaxy3, 1.3.3+galaxy0, 1.0.1+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	1.3.3+galaxy0	Missing	Missing	Missing	0.24.0+galaxy4	0.24.0+galaxy4	0.24.0+galaxy4	0.24.0+galaxy4	0.24.0+galaxy4	0.20.1+galaxy0, 0.23.2+galaxy0, 0.19.5+galaxy1	0.24.0+galaxy4	0.23.2+galaxy0, 1.0.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy3	Missing	Missing	Missing	Missing	Missing	Missing	2.1.5+galaxy3	2.1.5+galaxy3	Missing	Missing	Missing	Missing	Missing	Missing	2.1.5+galaxy3	Missing	Missing	Missing	2.1.5+galaxy3	2.1.5+galaxy3	2.1.5+galaxy3	2.1.5+galaxy3	2.1.5+galaxy3	2.1.5+galaxy2, 2.1.5+galaxy0, 2.1.4+galaxy2, 2.1.5+galaxy1	2.1.5+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	2.1.5+galaxy1	2.1.5+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	2.1.5+galaxy1	Missing	Missing	Missing	2.1.5+galaxy1	2.1.5+galaxy1	2.1.5+galaxy1	2.1.5+galaxy1	2.1.5+galaxy1	2.1.5+galaxy1	2.1.5+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	2.1.5+galaxy0	2.1.5+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	2.1.5+galaxy0	Missing	Missing	Missing	2.1.5+galaxy0	2.1.5+galaxy0	2.1.5+galaxy0	2.1.5+galaxy0	2.1.5+galaxy0	2.1.5+galaxy0	2.1.5+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3	Missing	Missing	Missing	Missing	Missing	1.27+galaxy3	Missing	1.27+galaxy4, 1.11+galaxy1, 1.7, 1.35+galaxy1, 1.33+galaxy3	Missing	Missing	Missing	Missing	Missing	Missing	1.34+galaxy0	Missing	Missing	Missing	1.27+galaxy3	1.27+galaxy3	1.27+galaxy3	1.27+galaxy3	1.27+galaxy3	1.11+galaxy0, 1.7, 1.7.1, 1.8+galaxy0, 1.9+galaxy1, 1.8+galaxy1, 1.9, 1.8+galaxy2	1.27+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.20+galaxy3	Missing	Missing	Missing	Missing	Missing	1.20+galaxy3	Missing	1.22+galaxy1, 1.21+galaxy0, 1.22+galaxy2	Missing	1.22+galaxy1	Missing	Missing	Missing	Missing	1.22+galaxy2	Missing	Missing	Missing	1.20+galaxy3	1.20+galaxy3	1.20+galaxy3	1.20+galaxy3	1.20+galaxy3	1.15.1+galaxy0, 1.9+galaxy3, 1.13+galaxy1, 1.13, 1.9+galaxy1, 1.13+galaxy2, 1.9+galaxy2	1.20+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/5.2+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	5.2+galaxy1, 5.4+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	5.4+galaxy0, 4.3+T.galaxy2, 4.3+T.galaxy1	Missing	Missing	Missing	5.2+galaxy0	5.2+galaxy0	5.2+galaxy0	5.2+galaxy0	5.2+galaxy0	4.3+T.galaxy1	5.2+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/5.2+galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	5.4+galaxy0, 5.2+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	5.4+galaxy0, 4.3+T.galaxy6, 4.3+T.galaxy4	Missing	Missing	Missing	5.2+galaxy0	5.2+galaxy0	5.2+galaxy0	5.2+galaxy0	5.2+galaxy0	4.3+T.galaxy4, 4.3+T.galaxy5, 4.3+T.galaxy3, 4.3+T.galaxy2	5.2+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing	4.5covid19	Missing	Missing	Missing	4.5covid19	4.5covid19	4.5covid19	4.5covid19	4.5covid19	4.5covid19	4.5covid19	Missing
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	Missing	4.3+t.galaxy0	Missing	Missing	Missing	Missing	Missing	Missing	5.4.0c+galaxy0	Missing	Missing	Missing	4.3+t.galaxy0	4.3+t.galaxy0	4.3+t.galaxy0	4.3+t.galaxy0	4.3+t.galaxy0	4.3+t.galaxy0	4.3+t.galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.1+galaxy1	Missing	Missing	Missing	Missing	Missing	3.1.1+galaxy1	Missing	3.1.1+galaxy1	Missing	Missing	Missing	Missing	Missing	Missing	3.1.1+galaxy1	Missing	Missing	Missing	3.1.1+galaxy1	3.1.1+galaxy1	2.10.4+galaxy1, 3.1.1+galaxy0, 3.0.5+galaxy3, 2.10.4+galaxy2, 3.0.5+galaxy0, 3.0.3+galaxy0, 2.10.8+galaxy0, 2.10.9+galaxy0, 2.10.4, 2.10.7+galaxy0, 2.10.7+galaxy1, 2.10.7+galaxy2	3.1.1+galaxy1	3.1.1+galaxy1	2.11.0+galaxy1	3.1.1+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0	Missing	Missing	Missing	Missing	Missing	5.1.0	5.1.0	5.1.0	Missing	5.1.0	Missing	Missing	Missing	Missing	5.1.0	Missing	Missing	Missing	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	Missing

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Learning Pathways using materials from this Topic

Admin Training Course

Learn how to setup, configure, and maintain your own Galaxy server. This learning pathway will guide you through all the steps required to setup your own Galaxy server with Ansible, configuring it, and making it production ready.

Galaxy administrators 5-day course admin

Plot of ChIP-Seq signal from multiple samples across a genome region

Epigenetics data analysis with Galaxy

Familiarize yourself with the Galaxy user interface and its most important features, then move on to analysis of genomic interval and deep-sequencing data with tools and tool suites like MACS2, bedtools and deepTools.

beginner genomic-intervals epigenetics

Genome annotation for eukaryotes

Learn how to annotate an eukaryotic genome sequence: identify repeated regions, find the position and function of genes, and even set up a manual curation environment with Apollo.

genome-annotation eukaryote

Genome annotation for prokaryotes

Learn how to annotate a prokaryotic genome sequence: find the position and function of genes, and even set up a manual curation environment with Apollo.

genome-annotation prokaryote

Introduction to Galaxy and Ecological data analysis

This learning path aims to teach you the basics of Galaxy and analysis of ecological data. You will learn how to use Galaxy for analysis, and will be guided through the common steps of biodiversity data analysis: download, check, filter and explore biodiversity data and analyze abundance data through modeling.

beginner ecology

Introduction to Galaxy and Sequence analysis

This learning path aims to teach you the basics of Galaxy and analysis of sequencing data. You will learn how to use Galaxy for analysis, and will be guided through the most common first steps of any genome analysis; quality control and a mapping or assembly of your genomic sequences.

beginner introduction sequence-analysis assembly

Image of cells in different coloured clusters

Introduction to Galaxy and Single Cell RNA Sequence analysis

This learning path aims to teach you the basics of Galaxy and analysis of Single Cell RNA-seq data. You will learn how to use Galaxy for analysis, and an important Galaxy feature for iterative single cell analysis. You’ll tbe guided through the general theory of single analysis and then perform a basic analysis of 10X chromium data. For support throughout...

beginner single-cell

Building and Annotating Metagenome-Assembled Genomes (MAGs) from Metagenomics Reads

This learning path will guide you through the process of constructing and analyzing Metagenome-Assembled Genomes (MAGs) using the Galaxy platform. You will explore the key steps involved in transforming raw metagenomic data into high-quality MAGs, from preprocessing to functional annotation. By the end of this path, you will be able to: List and describe the essential steps in MAGs construction,...

Metagenomics data processing and analysis for microbiome

This learning path aims to teach you the basics of Galaxy and analysis of metagenomics data. You will learn how to use Galaxy for analysis, and will be guided through the common steps of microbiome data analysis: quality control, taxonomic profiling, taxonomic binning, assembly, functional profiling, and also some applications

Onboarding for new contributors

This learning path aims to teach you how to contribute to GTN training materials. From editing typos to rendering test GTN sites, you will progress from being a user to a contributor. For support throughout these tutorials, join our Galaxy training network on Matrix to ask questions!

introduction contributing cofest

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