Leonid Kostrykin

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Imaging

Tutorials

• FAIR Data, Workflows, and Research / FAIR Bioimage Metadata 🧐
• FAIR Data, Workflows, and Research / REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data 🧐
• Imaging / Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy 🧐
• Imaging / Introduction to Image Analysis using Galaxy ✍️ 🧐
• Imaging / Execute a BiaPy workflow in Galaxy 🧐
• Imaging / Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools 🧐
• Imaging / Nucleoli segmentation and feature extraction using CellProfiler 🧐
• Imaging / End-to-End Tissue Microarray Image Analysis with Galaxy-ME 🧐
• Imaging / Content Tracking and Verification in Galaxy Workflows with ISCC-SUM 🧐
• Imaging / Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy 🧐
• Imaging / Voronoi segmentation ✍️ 🧐
• Imaging / Tracking of mitochondria and capturing mitoflashes ✍️ 🧐
• Imaging / Using BioImage.IO models for image analysis in Galaxy ✍️ 📝 🧐
• Imaging / Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines 🧐
• Imaging / Where to start with bioimage analysis in Galaxy ✍️ 🧐
• Imaging / Training Custom YOLO Models for Segmentation of Bioimages 🧐
• Imaging / Analyse HeLa fluorescence siRNA screen ✍️ 🧐
• Imaging / Object tracking using CellProfiler 🧐
• Imaging / Segmentation of Anatomical Structures in Medical 3-D Images ✍️ 🧐

FAQs

• Changing the data type of multiple datasets or collections

GitHub Activity

github Issues Reported

13 Merged Pull Requests

See all of the github Pull Requests and github Commits by Leonid Kostrykin.

• Add tutorial: Segmentation of Anatomical Structures in Medical 3-D Images
  imaging
  faqs
• Add some tags for consistency
  imaging
• Update tutorial: Using BioImage.IO models for image analysis in Galaxy
  imaging
• Update tutorial: Using BioImage.IO models for image analysis in Galaxy
  imaging
• Introduction to Image Analysis using Galaxy: Fix explanations about 16bit images
  imaging

Reviewed 32 PRs

We love our community reviewing each other's work!

• Update data-library.yaml for omero-suite tutorial
  imaging
• Add tutorial: Segmentation of Anatomical Structures in Medical 3-D Images
  imaging
  faqs
• FIX: cellpose citation in "Where to start with bioimage analysis in Galaxy"
  imaging
• Add funding information to the tutorial
  imaging
• Fix glossary heading duplication in tutorial.md
  imaging

News

External Links

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