Leonid Kostrykin

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Imaging

Tutorials

• Imaging / Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy 🧐
• Imaging / Introduction to Image Analysis using Galaxy ✍️ 🧐
• Imaging / Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy 🧐
• Imaging / Where to start with bioimage analysis in Galaxy ✍️ 🧐
• Imaging / Tracking of mitochondria and capturing mitoflashes ✍️ 🧐
• Imaging / Execute a BiaPy workflow in Galaxy 🧐
• Imaging / Content Tracking and Verification in Galaxy Workflows with ISCC-SUM 🧐
• Imaging / Segmentation of Anatomical Structures in Medical 3-D Images ✍️
• Imaging / Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines 🧐
• Imaging / End-to-End Tissue Microarray Image Analysis with Galaxy-ME 🧐
• Imaging / Analyse HeLa fluorescence siRNA screen ✍️ 🧐
• Imaging / Object tracking using CellProfiler 🧐
• Imaging / Nucleoli segmentation and feature extraction using CellProfiler 🧐
• Imaging / Training Custom YOLO Models for Segmentation of Bioimages 🧐
• Imaging / Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools 🧐
• Imaging / Voronoi segmentation ✍️ 🧐
• Imaging / Using BioImage.IO models for image analysis in Galaxy ✍️ 📝 🧐
• FAIR Data, Workflows, and Research / FAIR Bioimage Metadata 🧐
• FAIR Data, Workflows, and Research / REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data 🧐

FAQs

• Changing the data type of multiple datasets or collections

GitHub Activity

github Issues Reported

12 Merged Pull Requests

See all of the github Pull Requests and github Commits by Leonid Kostrykin.

• Add some tags for consistency
  imaging
• Update tutorial: Using BioImage.IO models for image analysis in Galaxy
  imaging
• Update tutorial: Using BioImage.IO models for image analysis in Galaxy
  imaging
• Introduction to Image Analysis using Galaxy: Fix explanations about 16bit images
  imaging
• Detection of Mitoflashes: Fix citation in tutorial
  imaging

Reviewed 30 PRs

We love our community reviewing each other's work!

• FIX: cellpose citation in "Where to start with bioimage analysis in Galaxy"
  imaging
• Add funding information to the tutorial
  imaging
• Fix glossary heading duplication in tutorial.md
  imaging
• Add tutorial: Where to start with bioimage analysis in Galaxy
  imaging
• FIX: BiaPy Training tutorial and data library
  template-and-tools
  imaging

News

External Links

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