Assembly — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Tristan Reynolds

Anton Nekrutenko

Delphine Lariviere

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	Done ✅ (3 members)	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Done ✅	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (6 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.
Review Feedback Received	Ongoing 🔁	Review all feedback received for the Assembly topic and create GitHub issues or PRs where needed.
Review open Pull Requests	Ongoing 🔁	View all open PRs in the Assembly topic and review, comment and merge!
Review open GitHub Issues	Ongoing 🔁	View all open issues related to the Assembly topic and comment, fix, or ask others for help!

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
An Introduction to Genome Assembly	✅			✅
An introduction to get started in genome assembly and annotation	✅			✅
Deeper look into Genome Assembly algorithms	❌			✅
Genome assembly and assembly QC - Introduction short version	✅			✅
Assembly of metagenomic sequencing data	✅			✅
De Bruijn Graph Assembly	✅			✅
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data	✅		✅	✅
Chloroplast genome assembly	✅			✅
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)	✅		✅	✅
Hybrid genome assembly - Nanopore and Illumina	✅			✅
Large genome assembly and polishing	✅			✅
Unicycler Assembly	✅		✅	✅
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads	❌	✅		✅
Assembly of the mitochondrial genome from PacBio HiFi reads	❌			✅
Genome assembly using PacBio data	✅		✅	❌
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data	❌			✅
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step	✅			✅
Decontamination of a genome assembly	✅			✅
ERGA post-assembly QC	❌			✅
Genome Assembly Quality Control	❌		✅	✅
Making sense of a newly assembled genome	❌	✅		✅

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
An Introduction to Genome Assembly	Intro to Genome Assembly	Oct 6, 2026	5	✅	❌	❌
Assembly of metagenomic sequencing data	Assembly of metagenomic sequencing data	Oct 6, 2026	2	✅	✅	❌
Assembly of metagenomic sequencing data	workflow-generate-dataset-for-assembly-tutorial	Oct 6, 2026	1	❌	❌	❌
De Bruijn Graph Assembly	Debruijn Graph SPAdes Assembly	Oct 6, 2026	1	✅	✅	❌
De Bruijn Graph Assembly	Debruijn Graph Velvet Full and SPAdes Assembly	Oct 6, 2026	1	✅	✅	❌
De Bruijn Graph Assembly	Debruijn Graph Velvet Optimiser and SPAdes Assembly	Oct 6, 2026	1	✅	✅	❌
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data	Genome Assembly of MRSA using Illumina MiSeq Data	Oct 6, 2026	3	✅	✅	❌
Chloroplast genome assembly	Chloroplast-genome-assembly-and-annotation	Oct 6, 2026	3	❌	❌	❌
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)	Genome Assembly of MRSA using Oxford Nanopore MinION (and Illumina data if available)	Oct 6, 2026	2	✅	✅	❌
Hybrid genome assembly - Nanopore and Illumina	Hybrid Genome Assembly Tutorial Workflow	Oct 6, 2026	1	✅	✅	✅
Large genome assembly and polishing	Assembly polishing - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	Assembly with Flye - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	Assess genome quality - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	Combined workflows for large genome assembly - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	Data QC - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	Racon polish with Illumina reads (R1 only), x2 - upgraded	Oct 6, 2026	2	❌	❌	❌
Large genome assembly and polishing	Racon polish with long reads, x4 - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	Trim and filter reads - fastp - upgraded	Oct 6, 2026	2	❌	✅	❌
Large genome assembly and polishing	kmer counting - meryl - upgraded	Oct 6, 2026	2	❌	✅	❌
Unicycler Assembly	Unicycler training	Oct 6, 2026	4	✅	❌	❌
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads	assembly_with_preprocessing	Oct 6, 2026	1	❌	❌	❌
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads	assembly_with_preprocessing_and_sra_download	Oct 6, 2026	1	❌	❌	❌
Assembly of the mitochondrial genome from PacBio HiFi reads	Mitogenome-Assembly-VGP0	Oct 6, 2026	2	✅	❌	❌
Genome assembly using PacBio data	Genome Assembly using PacBio data	Oct 6, 2026	1	✅	❌	❌
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step	VGP assembly: training workflow	Oct 6, 2026	4	❌	❌	❌
Decontamination of a genome assembly	Assembly-decontamination-VGP9	Oct 6, 2026	1	✅	✅	❌
ERGA post-assembly QC	Post-assembly workflow	Oct 6, 2026	2	✅	✅	❌
Genome Assembly Quality Control	Genome Assembly Quality Control	Oct 6, 2026	1	❌	❌	❌
Making sense of a newly assembled genome	Ecoli Comparison	Oct 6, 2026	3	❌	❌	❌

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0	1.2.0.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.74+galaxy1, 0.74+galaxy0	0.72+galaxy1	0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.74+galaxy1, 0.74+galaxy0	0.73+galaxy0	0.73+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velvetg/1.2.10.1	1.2.10.2	1.2.10.1	1.2.10.1	1.2.10.2, 1.2.10.3	Missing	1.2.10.2	1.2.10.1	Missing
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velvetg/1.2.10.2	1.2.10.2	1.2.10.2	1.2.10.2	1.2.10.2	Missing	1.2.10.2	1.2.10.2	Missing
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.1	1.2.10.3	1.2.10.1	1.2.10.1	1.2.10.3, 1.2.10.4	Missing	1.2.10.3	1.2.10.1	Missing
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.3	1.2.10.3	1.2.10.3	1.2.10.3	1.2.10.3	Missing	1.2.10.3	1.2.10.3	Missing
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.9, 1.7.1, 1.8+galaxy0, 1.8+galaxy1, 1.11+galaxy0, 1.8+galaxy2, 1.7, 1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7	1.7	1.7	1.7	1.7	1.35+galaxy3, 1.27+galaxy0, 1.27+galaxy4, 1.6, 1.33+galaxy0, 1.8+galaxy1, 1.35+galaxy1, 1.35+galaxy2, 1.11+galaxy0, 1.24.1+galaxy0, 1.33+galaxy3, 1.5.0, 1.11+galaxy1, 1.33+galaxy2, 1.9+galaxy1, 1.34+galaxy0, 1.35+galaxy4, 1.27+galaxy3	1.33+galaxy0, 1.35+galaxy1, 1.33+galaxy3, 1.11+galaxy1, 1.27+galaxy3	1.35+galaxy3, 1.27+galaxy1, 1.9, 1.27+galaxy0, 1.27+galaxy4, 1.6, 1.33+galaxy0, 1.8+galaxy0, 1.8+galaxy1, 1.35+galaxy1, 1.35+galaxy0, 1.35+galaxy2, 1.11+galaxy0, 1.24.1+galaxy0, 1.33+galaxy3, 1.11+galaxy1, 1.33+galaxy2, 1.9+galaxy1, 1.3.1, 1.34+galaxy0, 1.35+galaxy4, 1.27+galaxy3, 1.33+galaxy1, 1.5.2, 1.27+galaxy2, 1.2.1, 1.5.1	1.7
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy0	5.0.2+galaxy0	5.0.2+galaxy0	5.0.2+galaxy0	5.0.2+galaxy0	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.0.2+galaxy0	5.2.0+galaxy0, 5.0.2+galaxy4, 5.0.2+galaxy2, 5.0.2+galaxy5, 5.0.2+galaxy1, 5.2.0+galaxy1, 5.0.2+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
random_lines1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/unique/bg_uniq/0.3	0.3	0.3	Missing	0.3	0.3	Missing	Missing	Missing
toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.5.1+galaxy0	2.5.1+galaxy0	2.5.1+galaxy0	2.5.2+galaxy3, 2.5.3+galaxy0, 2.5.2+galaxy2	2.5.1+galaxy0	2.5.2+galaxy3, 2.4.0.0, 2.5.3+galaxy0, 2.5.2+galaxy2	2.5.2+galaxy3, 2.5.2+galaxy1, 2.5.3+galaxy0, 2.5.2+galaxy2	2.5.1+galaxy0	2.5.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy1	2.4.5+galaxy1	2.4.5+galaxy1	2.4.5+galaxy1	2.4.5+galaxy1	2.4.2+galaxy0, 2.5.5+galaxy0, 2.5.4+galaxy0, 2.5.3+galaxy1	2.5.5+galaxy0, 2.5.3+galaxy1, 2.5.0+galaxy0	2.4.5+galaxy1	2.4.5+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1	2.5.3+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.73+galaxy0	0.74+galaxy1, 0.74+galaxy0	0.73+galaxy0	0.73+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy4	0.8.1+galaxy4	0.8.1+galaxy4	0.8.1+galaxy4	0.8.1+galaxy4	2022.09+galaxy4	2022.09+galaxy4	0.8.1+galaxy4	0.8.1+galaxy3, 2022.09+galaxy4, 0.8.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	2022.09+galaxy2	2022.09+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3
toolshed.g2.bx.psu.edu/repos/iuc/coverm_contig/coverm_contig/0.7.0+galaxy0	0.7.0+galaxy0	0.7.0+galaxy0	0.7.0+galaxy0	0.7.0+galaxy0	0.7.0+galaxy0	0.7.0+galaxy0	0.7.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0	2.0.0	2.0.0	2.0.0	3.3.1	3.3.1, 3.3.0, 3.1.2	3.3.1, 3.3.0	2.0.0	2.0.0
toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy0	1.2.9+galaxy0	1.2.9+galaxy0	1.2.9+galaxy0	1.2.9+galaxy0	1.2.9+galaxy2	1.2.9+galaxy0	1.2.9+galaxy0	1.2.9+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy2	1.2.9+galaxy2	1.2.9+galaxy2	1.2.9+galaxy2	1.2.9+galaxy2	1.2.9+galaxy2	1.2.9+galaxy2	1.2.9+galaxy2	1.1.3.5, 1.2.9+galaxy0, 1.1.3.4
toolshed.g2.bx.psu.edu/repos/iuc/megahit_contig2fastg/megahit_contig2fastg/1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1	Missing	1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/megahit_contig2fastg/megahit_contig2fastg/1.1.3+galaxy10	1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1	Missing	1.1.3+galaxy1	1.1.3+galaxy1	1.1.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9	0.5.9	0.5.9	0.5.9	0.5.9	Missing	0.5.9	0.5.9	0.5.9
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.2.0+galaxy0, 5.0.2+galaxy4, 5.0.2+galaxy2, 5.0.2+galaxy5, 5.0.2+galaxy1, 5.2.0+galaxy1, 5.0.2+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1	1.3.1	1.3.1	1.3.1	1.3.1	1.4+galaxy0, 1.5+galaxy0	1.3.1	1.3.1	1.3.1
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy0	4.0+galaxy0	4.0+galaxy0	4.0+galaxy0	4.0+galaxy0	4.9+galaxy1, 4.0+galaxy1, 5.2+galaxy1, 5.2+galaxy0, 5.1+galaxy0, 4.9+galaxy0, 1.16.3, 3.7+galaxy0, 5.2+galaxy2, 1.16.8	4.8+galaxy1, 5.1+galaxy0, 4.4+galaxy0, 5.2+galaxy2	4.0+galaxy0	1.16.5
toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	3.15.4+galaxy1, 3.9.0, 3.15.4+galaxy2, 3.15.4+galaxy0, 3.9.0.1, 3.15.3+galaxy2, 3.15.3+galaxy1

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velvetg/1.2.10.2	1.2.10.2	1.2.10.2	1.2.10.2	1.2.10.2	Missing	1.2.10.2	1.2.10.2	Missing
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.3	1.2.10.3	1.2.10.3	1.2.10.3	1.2.10.3	Missing	1.2.10.3	1.2.10.3	Missing
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0	0.8.1+galaxy0	0.8.1+galaxy0	0.8.1+galaxy0	0.8.1+galaxy3, 2022.09+galaxy4, 0.8.1+galaxy4, 0.8.1+galaxy2	2022.09+galaxy4	2022.09+galaxy4	0.8.1+galaxy0	0.8.1+galaxy3, 2022.09+galaxy4, 0.8.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1	1.0.1	1.0.1	1.0.1	1.0.3, 2.0	2.0	2.0	1.0.1	1.0.1
toolshed.g2.bx.psu.edu/repos/nml/spades/spades/4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0	4.2.0+galaxy0
toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6	2.2.6	2.2.6	2.2.6	Missing	Missing	2.2.6	2.2.6	2.2.6

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2	2022.09+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/falco/falco/1.2.4+galaxy0	1.2.4+galaxy0	1.2.4+galaxy0	1.2.4+galaxy0	1.2.4+galaxy0	1.3.2+galaxy0	1.2.4+galaxy0	1.2.4+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0	0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy0, 0.23.4+galaxy0, 1.3.2+galaxy0, 0.23.2+galaxy0	1.0.1+galaxy3	0.20.1+galaxy0, 0.19.5+galaxy1, 0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy1	1.1.0+galaxy1	1.1.0+galaxy1	1.1.0+galaxy1	1.1.0+galaxy1	1.1.0+galaxy2, 1.4.2+galaxy1, 1.4.2+galaxy0	1.1.0+galaxy1	1.1.0+galaxy1	1.1.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2	1.1.0+galaxy2
upload1	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.6	2.6	2.6	2.6	2.9+galaxy0, 2.9.1+galaxy0, 2.9.5+galaxy0, 2.8.3+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0, 2.9.3+galaxy0	2.6	2.9.1+galaxy0, 2.9.6+galaxy0, 2.9.3+galaxy0	2.6	2.6
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.6+galaxy0	2.6+galaxy0	2.9+galaxy0, 2.9.1+galaxy0, 2.6, 2.9.5+galaxy0, 2.8.2+galaxy0, 2.8.3+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0, 2.9.3+galaxy0	2.9+galaxy0, 2.9.1+galaxy0, 2.6, 2.9.5+galaxy0, 2.8.2+galaxy0, 2.3.7, 2.8.3+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0, 2.9.3+galaxy0	2.9+galaxy0, 2.9.1+galaxy0, 2.9.5+galaxy0, 2.8.3+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0, 2.9.3+galaxy0	2.9.1+galaxy0, 2.6, 2.9.5+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0	2.9.1+galaxy0, 2.9.6+galaxy0, 2.9.3+galaxy0	2.9+galaxy0, 2.9.1+galaxy0, 2.6, 2.3.7, 2.9.6+galaxy0, 2.9.4+galaxy0, 2.9.3+galaxy0	2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5	1.14.5	1.14.5	1.14.5	1.14.6+galaxy1, 1.14.6+galaxy2, 1.14.5+galaxy0, 1.13	Missing	1.14.6+galaxy1	1.14.5	1.14.5+galaxy0
toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5+galaxy0	1.14.5+galaxy0	1.14.5+galaxy0	1.14.6+galaxy1, 1.14.6+galaxy2, 1.14.6+galaxy0, 1.14.5, 1.12.0	1.14.5+galaxy0	Missing	1.14.6+galaxy1	1.14.5+galaxy0	1.14.5+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1	0.7.17.1	0.7.17.1	0.7.17.1	0.7.17.1	0.7.17.1	0.7.19, 0.7.17.2, 0.7.18	0.7.17.1	0.7.17.1
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	2022.09+galaxy4	2022.09+galaxy4	0.8.1+galaxy2	0.8.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy1	0.8.1+galaxy1	0.8.1+galaxy1	0.8.1+galaxy1	0.8.1+galaxy1	2022.09+galaxy2	2022.09+galaxy2	0.8.1+galaxy1	0.8.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1	1.0.1	1.0.1	1.0.1	1.0.3, 2.0	2.0	2.0	1.0.1	1.0.1
toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.4+galaxy3	1.16.4+galaxy3	1.16.4+galaxy3	1.16.4+galaxy3	1.16.10+galaxy0, 1.16.11+galaxy1, 1.16.9+galaxy0, 1.16.8+galaxy1, 1.16.5+galaxy7	1.16.11+galaxy1, 1.16.11+galaxy0	1.16.11+galaxy1	1.16.4+galaxy3	1.16.10+galaxy0, 1.16.11+galaxy1, 1.16.9+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.9+galaxy0	1.16.9+galaxy0	1.16.9+galaxy0	1.16.9+galaxy0	1.16.9+galaxy0	1.16.11+galaxy1, 1.16.11+galaxy0	1.16.11+galaxy1	1.16.9+galaxy0	1.16.9+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.28.2+galaxy1	1.28.2+galaxy1	1.28.2+galaxy1	1.28.2+galaxy1	1.28.2+galaxy1	1.28.2+galaxy1	1.44.1+galaxy0, 1.41.0+galaxy0, 1.42.0+galaxy1, 1.46.2+galaxy0	1.28.2+galaxy1	1.28.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1	1.20.1	1.20.1	1.20.1	1.20.1	Missing	1.20.1	1.20.1	1.20.1
upload1	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
CONVERTER_bz2_to_uncompressed	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
__EXTRACT_DATASET__	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
__FLATTEN__	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.1+galaxy0	2.9.1+galaxy0	2.9.1+galaxy0	2.9.1+galaxy0	2.9.1+galaxy0	2.9.1+galaxy0	2.9.1+galaxy0	2.9.1+galaxy0	2.9+galaxy0, 2.6, 2.8.3+galaxy0, 2.6+galaxy0, 2.9.6+galaxy0, 2.9.3+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.73+galaxy0, 0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy4, 2.3+galaxy0	2.2.1+galaxy1	2.2.1+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy3	1.0.1+galaxy0, 0.23.4+galaxy0, 1.3.2+galaxy0, 0.23.2+galaxy0	1.0.1+galaxy3	0.20.1+galaxy0, 0.19.5+galaxy1, 0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.0	0.2.0	0.2.0	0.2.0	0.3.1+galaxy0, 0.3.0+galaxy0, 0.2.1+galaxy0	Missing	0.3.1+galaxy0, 0.2.1+galaxy0	0.2.0	0.2.0
toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.1+galaxy0	0.2.1+galaxy0	0.2.1+galaxy0	0.2.1+galaxy0	0.2.1+galaxy0	Missing	0.2.1+galaxy0	0.2.1+galaxy0	0.2.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.41.0+galaxy0	1.41.0+galaxy0	1.41.0+galaxy0	1.41.0+galaxy0	1.41.0+galaxy0	1.44.1+galaxy0, 1.47.1+galaxy0, 1.43.0+galaxy0, 1.47.0+galaxy0, 1.48.0+galaxy0, 1.46.1+galaxy0, 1.28.2+galaxy1, 1.42.0+galaxy1, 1.46.2+galaxy0	1.41.0+galaxy0	1.41.0+galaxy0	1.25.0+galaxy1, 1.36.2+galaxy1, 1.28.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/polypolish/polypolish/0.5.0+galaxy2	0.5.0+galaxy2	Missing	0.5.0+galaxy2	0.5.0+galaxy2	Missing	0.5.0+galaxy2	0.5.0+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3	0.2.3	0.2.3	0.2.3	0.2.4+galaxy1	0.2.3	0.2.4+galaxy1, 0.2.4+galaxy0	0.2.3	0.2.3
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1
upload1	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0	2.9.6+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.19	0.7.19	0.7.19	0.7.19	0.7.19	0.7.19	0.7.19	0.7.19	0.7.17.2, 0.7.17.1
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy1	5.8.0+galaxy1	5.8.0+galaxy1	5.8.0+galaxy1	5.8.0+galaxy1	5.8.0+galaxy1	5.8.0+galaxy1	5.8.0+galaxy1	5.3.2+galaxy0, 4.1.4, 5.3.1+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.2.1+galaxy0, 4.1.2, 5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2	5.8.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4	1.27+galaxy4	1.27+galaxy4	1.27+galaxy4	1.27+galaxy4	1.27+galaxy4	1.33+galaxy0, 1.35+galaxy1, 1.33+galaxy3, 1.11+galaxy1, 1.27+galaxy3	1.27+galaxy4	1.9, 1.7.1, 1.8+galaxy0, 1.8+galaxy1, 1.11+galaxy0, 1.8+galaxy2, 1.7, 1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1	1.20.1	1.20.1	1.20.1	1.20.1	Missing	1.20.1	1.20.1	1.20.1
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.3.0+galaxy0	5.2.0+galaxy0, 5.0.2+galaxy4, 5.0.2+galaxy2, 5.0.2+galaxy5, 5.0.2+galaxy1, 5.2.0+galaxy1, 5.0.2+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.5.1+galaxy0	0.5.1+galaxy0	0.5.1+galaxy0	0.5.1+galaxy0	0.5.1+galaxy0	0.5.1+galaxy0	0.5.1+galaxy0	0.5.1+galaxy0	0.4.8.0

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
barchart_gnuplot	built-in	Missing	built-in	Missing	Missing	Missing	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.3+galaxy0	2.9.3+galaxy0	2.9.3+galaxy0	2.9.3+galaxy0	2.9.3+galaxy0	2.9.1+galaxy0, 2.6, 2.9.5+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0	2.9.3+galaxy0	2.9.3+galaxy0	2.9.3+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1	1.5.0+galaxy1	1.5.0+galaxy1	1.5.0+galaxy1	1.5.0+galaxy1	1.5.0+galaxy1	1.5.0+galaxy1	1.5.0+galaxy1	1.4.20+galaxy0, 1.4.13, 1.4.13+galaxy1, 1.5.0+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.74+galaxy0	0.73+galaxy0, 0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.3.2+galaxy0, 4.1.4, 5.3.1+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.2.1+galaxy0, 4.1.2, 5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0	0.23.4+galaxy0	0.23.4+galaxy0	0.23.4+galaxy0	0.23.4+galaxy0	0.23.4+galaxy0	0.23.4+galaxy0	0.23.4+galaxy0	0.20.1+galaxy0, 0.19.5+galaxy1, 0.23.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.1.0+galaxy0, 2.0.1+galaxy0	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.7.2+galaxy1	1.7.2+galaxy1	1.7.2+galaxy1	1.7.2+galaxy1	1.7.2+galaxy1	1.7.2+galaxy1	1.7.2+galaxy1	1.7.2+galaxy1	1.4.4+galaxy1, 1.3.2+galaxy0, 1.0.3+galaxy2, 1.4.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	Missing
toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0	2.26+galaxy0	2.26+galaxy0	2.26+galaxy0	2.26+galaxy0	2.26+galaxy0	2.26+galaxy0	2.26+galaxy0	2.24+galaxy0, 2.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.11+galaxy1	1.9, 1.7.1, 1.8+galaxy0, 1.8+galaxy1, 1.11+galaxy0, 1.8+galaxy2, 1.7, 1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.42.0+galaxy1	1.42.0+galaxy1	1.42.0+galaxy1	1.42.0+galaxy1	1.42.0+galaxy1	1.42.0+galaxy1	1.42.0+galaxy1	1.42.0+galaxy1	1.25.0+galaxy1, 1.36.2+galaxy1, 1.28.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5	1.14.5	1.14.5	1.14.5	1.14.6+galaxy1, 1.14.6+galaxy2, 1.14.5+galaxy0, 1.13	Missing	1.14.6+galaxy1	1.14.5	1.14.5+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.72+galaxy1	0.74+galaxy1, 0.74+galaxy0	0.72+galaxy1	0.72+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7	1.7	1.7	1.7	1.7	1.35+galaxy3, 1.27+galaxy0, 1.27+galaxy4, 1.6, 1.33+galaxy0, 1.8+galaxy1, 1.35+galaxy1, 1.35+galaxy2, 1.11+galaxy0, 1.24.1+galaxy0, 1.33+galaxy3, 1.5.0, 1.11+galaxy1, 1.33+galaxy2, 1.9+galaxy1, 1.34+galaxy0, 1.35+galaxy4, 1.27+galaxy3	1.33+galaxy0, 1.35+galaxy1, 1.33+galaxy3, 1.11+galaxy1, 1.27+galaxy3	1.35+galaxy3, 1.27+galaxy1, 1.9, 1.27+galaxy0, 1.27+galaxy4, 1.6, 1.33+galaxy0, 1.8+galaxy0, 1.8+galaxy1, 1.35+galaxy1, 1.35+galaxy0, 1.35+galaxy2, 1.11+galaxy0, 1.24.1+galaxy0, 1.33+galaxy3, 1.11+galaxy1, 1.33+galaxy2, 1.9+galaxy1, 1.3.1, 1.34+galaxy0, 1.35+galaxy4, 1.27+galaxy3, 1.33+galaxy1, 1.5.2, 1.27+galaxy2, 1.2.1, 1.5.1	1.7
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy0	5.0.2+galaxy0	5.0.2+galaxy0	5.0.2+galaxy0	5.0.2+galaxy0	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.0.2+galaxy0	5.2.0+galaxy0, 5.0.2+galaxy4, 5.0.2+galaxy2, 5.0.2+galaxy5, 5.0.2+galaxy1, 5.2.0+galaxy1, 5.0.2+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0	0.4.8.0	0.4.8.0	0.4.8.0	0.4.8.0	0.4.8.0	0.5.0+galaxy1, 0.5.1+galaxy0	0.4.8.0	0.4.8.0

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
__ZIP_COLLECTION__	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0	2.3.4.3+galaxy0	2.3.4.3+galaxy0	2.3.4.3+galaxy0	2.3.4.3+galaxy0	2.4.2+galaxy0, 2.5.5+galaxy0, 2.5.4+galaxy0, 2.5.3+galaxy1	2.5.5+galaxy0, 2.5.3+galaxy1, 2.5.0+galaxy0	2.3.4.3+galaxy0	2.3.4.3+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.2	1.2	1.2	1.2	1.2	1.2	1.2	1.2	1.2
toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2	2.0.2+galaxy2	2.0.2+galaxy2	2.0.2+galaxy2	2.0.2+galaxy2	2.0.2+galaxy2	2.0.4, 2.0.9, 2.0.7, 2.0.5	2.0.2+galaxy2	2.0.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	0.8.1+galaxy2	2022.09+galaxy4	2022.09+galaxy4	0.8.1+galaxy2	0.8.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy1	0.8.1+galaxy1	0.8.1+galaxy1	0.8.1+galaxy1	0.8.1+galaxy1	2022.09+galaxy2	2022.09+galaxy2	0.8.1+galaxy1	0.8.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1	0.19.5+galaxy1	0.19.5+galaxy1	0.19.5+galaxy1	0.19.5+galaxy1	0.24.0+galaxy3, 0.20.1+galaxy0, 1.1.0+galaxy0, 1.0.1+galaxy3, 0.23.4+galaxy1, 1.0.1+galaxy0, 1.3.7+galaxy0, 1.0.1+galaxy1, 1.3.3+galaxy0, 0.23.4+galaxy0, 1.3.5+galaxy0, 1.0.1+galaxy2, 0.26.0+galaxy0, 0.24.1+galaxy0, 1.2.0+galaxy0, 0.23.4+galaxy2, 1.3.6+galaxy0, 1.3.1+galaxy0, 1.3.2+galaxy0, 0.23.2+galaxy0, 0.24.0+galaxy4	1.0.1+galaxy0, 0.23.4+galaxy0, 1.3.2+galaxy0, 0.23.2+galaxy0	0.19.5+galaxy1	0.19.5+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy1	2.17+galaxy1	2.26+galaxy0, 2.20+galaxy1, 2.24+galaxy0, 2.17+galaxy2, 2.28+galaxy2, 2.30+galaxy0, 2.28+galaxy0, 2.17+galaxy3, 2.20+galaxy2, 2.17, 2.17+galaxy0, 2.23+galaxy0, 2.27+galaxy0, 2.17+galaxy4, 2.28+galaxy1, 2.31+galaxy1	2.17+galaxy1	2.26+galaxy0, 2.22+galaxy0, 2.24+galaxy0, 2.17+galaxy2, 2.28+galaxy2, 2.30+galaxy0, 2.28+galaxy0, 2.31+galaxy0, 2.23+galaxy0, 2.27+galaxy0, 2.12, 2.28+galaxy1, 2.31+galaxy1	2.26+galaxy0, 2.17+galaxy2, 2.28+galaxy2, 2.30+galaxy0, 2.28+galaxy0, 2.31+galaxy0, 2.17+galaxy4, 2.28+galaxy1, 2.31+galaxy1	2.26+galaxy0, 2.30+galaxy0, 2.28+galaxy0, 2.28+galaxy1	2.17+galaxy1	2.24+galaxy0, 2.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7	1.7	1.7	1.7	1.7	1.35+galaxy3, 1.27+galaxy0, 1.27+galaxy4, 1.6, 1.33+galaxy0, 1.8+galaxy1, 1.35+galaxy1, 1.35+galaxy2, 1.11+galaxy0, 1.24.1+galaxy0, 1.33+galaxy3, 1.5.0, 1.11+galaxy1, 1.33+galaxy2, 1.9+galaxy1, 1.34+galaxy0, 1.35+galaxy4, 1.27+galaxy3	1.33+galaxy0, 1.35+galaxy1, 1.33+galaxy3, 1.11+galaxy1, 1.27+galaxy3	1.35+galaxy3, 1.27+galaxy1, 1.9, 1.27+galaxy0, 1.27+galaxy4, 1.6, 1.33+galaxy0, 1.8+galaxy0, 1.8+galaxy1, 1.35+galaxy1, 1.35+galaxy0, 1.35+galaxy2, 1.11+galaxy0, 1.24.1+galaxy0, 1.33+galaxy3, 1.11+galaxy1, 1.33+galaxy2, 1.9+galaxy1, 1.3.1, 1.34+galaxy0, 1.35+galaxy4, 1.27+galaxy3, 1.33+galaxy1, 1.5.2, 1.27+galaxy2, 1.2.1, 1.5.1	1.7
toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1	1.25.0+galaxy1	1.25.0+galaxy1	1.25.0+galaxy1	1.44.1+galaxy0, 1.42.0+galaxy0, 1.41.0+galaxy0, 1.47.1+galaxy0, 1.43.0+galaxy0, 1.36.2+galaxy1, 1.47.0+galaxy0, 1.48.0+galaxy0, 1.46.1+galaxy0, 1.28.2+galaxy1, 1.42.0+galaxy1, 1.46.2+galaxy0, 1.47.2+galaxy0	1.44.1+galaxy0, 1.47.1+galaxy0, 1.43.0+galaxy0, 1.47.0+galaxy0, 1.48.0+galaxy0, 1.46.1+galaxy0, 1.28.2+galaxy1, 1.42.0+galaxy1, 1.46.2+galaxy0	1.44.1+galaxy0, 1.41.0+galaxy0, 1.42.0+galaxy1, 1.46.2+galaxy0	1.25.0+galaxy1	1.25.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.15.1+galaxy0, 1.21+galaxy0, 1.15.1+galaxy2, 1.22+galaxy2	1.9+galaxy1	1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.9+galaxy1	1.20+galaxy3, 1.21+galaxy0, 1.9+galaxy2, 1.22+galaxy1, 1.13+galaxy2, 1.15.1+galaxy0, 1.22+galaxy2, 1.13+galaxy1, 1.9+galaxy3	1.21+galaxy0, 1.15.1+galaxy2, 1.15.1+galaxy0, 1.22+galaxy2	1.9+galaxy1	1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_sample/1.3.2	1.3.2	1.3.2	1.3.2	1.3.2	1.4+galaxy0, 1.5+galaxy0	1.3.2	1.3.2	1.3.2
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.10.4+galaxy1	2.10.4+galaxy1	2.10.4+galaxy1	2.10.4+galaxy1	3.1.1+galaxy1, 2.10.7+galaxy2, 3.1.0+galaxy0, 3.0.10+galaxy0, 2.11.0+galaxy0, 2.10.4, 3.1.1+galaxy0, 2.11.0+galaxy1, 3.1.0+galaxy1, 3.0.8+galaxy0, 3.0.8+galaxy1, 3.0.5+galaxy3, 2.10.8+galaxy0, 3.0.3+galaxy0, 3.0.5+galaxy0, 3.0.0+galaxy0	3.1.1+galaxy1, 2.11.0+galaxy0, 3.1.1+galaxy0, 2.11.0+galaxy1, 2.10.9+galaxy0	3.1.1+galaxy1, 2.10.4, 3.1.1+galaxy0, 3.0.5+galaxy0	2.10.4+galaxy1	2.11.0+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0	0.4.8.0	0.4.8.0	0.4.8.0	0.4.8.0	0.4.8.0	0.5.0+galaxy1, 0.5.1+galaxy0	0.4.8.0	0.4.8.0
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.2	4.2	4.2	4.2	4.1, 5.1.0	4.2	5.1.0	4.2	4.2

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3.2.3+galaxy0	3.2.3+galaxy0	3.2.3+galaxy0	3.2.3+galaxy0	3.2.3+galaxy2	3.2.3+galaxy0	3.2.3+galaxy0	3.2.3+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/compress_file/compress_file/0.1.0	0.1.0	0.1.0	0.1.0	Missing	0.1.0	0.1.0	0.1.0	Missing

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9+galaxy0	2.9+galaxy0	2.9+galaxy0	2.9+galaxy0	2.9+galaxy0	2.9.1+galaxy0, 2.6, 2.9.5+galaxy0, 2.9.5+galaxy1, 2.9.6+galaxy0, 2.9.4+galaxy0	2.9.1+galaxy0, 2.9.6+galaxy0, 2.9.3+galaxy0	2.9+galaxy0	2.9+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.5+galaxy1	2.9.5+galaxy1	2.9.5+galaxy1	2.9.5+galaxy1	2.9.5+galaxy1	2.9.5+galaxy1	2.9.1+galaxy0, 2.9.6+galaxy0, 2.9.3+galaxy0	2.9+galaxy0, 2.9.1+galaxy0, 2.6, 2.3.7, 2.9.6+galaxy0, 2.9.4+galaxy0, 2.9.3+galaxy0	2.9+galaxy0, 2.6, 2.8.3+galaxy0, 2.6+galaxy0, 2.9.6+galaxy0, 2.9.3+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.25.0+galaxy0	0.25.0+galaxy0	0.25.0+galaxy0	0.25.0+galaxy0	0.25.0+galaxy0	0.25.0+galaxy0	0.25.0+galaxy0	Missing	0.25.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.4.6+galaxy0, 5.5.0+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0	5.8.0+galaxy0	5.8.0+galaxy0	5.8.0+galaxy0	5.8.0+galaxy0	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.4.6+galaxy0, 5.5.0+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy2	5.8.0+galaxy0	5.3.2+galaxy0, 4.1.4, 5.3.1+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.2.1+galaxy0, 4.1.2, 5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0
toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.2	0.1.2	0.1.2	0.1.2	0.1.2	Missing	0.1.2	0.1.2	0.1.2
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy3	5.0.2+galaxy3	5.0.2+galaxy3	5.0.2+galaxy3	5.0.2+galaxy3	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.0.2+galaxy3	5.0.2+galaxy3

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1	5.2.0+galaxy1

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
Convert characters1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
cat1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
sort1	Missing	Missing	Missing	built-in	built-in	built-in	Missing	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy0	3.7.0+galaxy0	3.7.0+galaxy0	3.7.0+galaxy0	Missing	3.7.0+galaxy3	3.7.0+galaxy3	3.7.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy3	3.7.0+galaxy3	3.7.0+galaxy3	3.7.0+galaxy3	Missing	3.7.0+galaxy3	3.7.0+galaxy3	3.7.0+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	1.3.11+galaxy0, 1.3.11+galaxy1, 1.3.11+galaxy2	1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0	0.19.8+galaxy0	0.19.8+galaxy0	0.19.8+galaxy0	0.19.8+galaxy0	0.25.0+galaxy3, 0.25.0+galaxy1, 0.25.0+galaxy0, 0.25.0+galaxy2	0.19.5+galaxy0, 0.25.0+galaxy3, 0.19.8+galaxy1, 0.25.0+galaxy0	Missing	0.25.0+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6	1.6	1.6	1.6	1.6	1.6	2.1, 2.0, 2.1+galaxy0, 1.4	1.6	1.6
toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0	2.0
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2	2.30.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy0	1.0+galaxy0	1.0+galaxy0	1.0+galaxy0	Missing	Missing	1.0+galaxy0	1.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy1	1.0+galaxy1	1.0+galaxy1	1.0+galaxy1	Missing	Missing	1.0+galaxy1	1.0+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.4.6+galaxy0, 5.5.0+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy2	5.2.2+galaxy2	5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.5.0+galaxy0	5.5.0+galaxy0	5.3.2+galaxy0, 4.1.4, 5.3.1+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.2.1+galaxy0, 4.1.2, 5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0	2.2.1+galaxy0	2.2.1+galaxy0	2.2.1+galaxy0	2.2.1+galaxy4, 2.2.1+galaxy3, 2.3+galaxy0, 2.2.1+galaxy1	2.2.1+galaxy4, 2.3+galaxy0	2.3+galaxy0, 2.2.1+galaxy1	2.2.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy1	2.2.1+galaxy4, 2.3+galaxy0	2.2.1+galaxy1	2.2.1+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3	0.0.3
toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy1	2.0+galaxy1	2.0+galaxy1	2.0+galaxy1	2.0+galaxy1	2.1.0+galaxy0, 2.0.1+galaxy0	2.1.0+galaxy0, 2.0.1+galaxy0, 2.0+galaxy2	2.0+galaxy1	2.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.1.0+galaxy0, 2.0.1+galaxy0	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.2	0.1.2	0.1.2	0.1.2	0.1.2	Missing	0.1.2	0.1.2	0.1.2
toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy1	1.3+galaxy1	1.3+galaxy1	1.3+galaxy1	1.3+galaxy3, 1.3+galaxy2, 1.3+galaxy4	1.3+galaxy4	1.3+galaxy3, 1.3+galaxy4	1.3+galaxy3, 1.3+galaxy2, 1.3+galaxy4	Missing
toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3	1.3+galaxy3	1.3+galaxy3	1.3+galaxy3	1.3+galaxy3	1.3+galaxy4	1.3+galaxy3	1.3+galaxy3	Missing
toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy4	1.3+galaxy4	1.3+galaxy4	1.3+galaxy4	1.3+galaxy4	1.3+galaxy6	1.3+galaxy6	1.3+galaxy4	Missing
toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	Missing
toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy4	2.17+galaxy4	2.17+galaxy4	2.17+galaxy4	2.26+galaxy0, 2.22+galaxy0, 2.24+galaxy0, 2.17+galaxy2, 2.28+galaxy2, 2.30+galaxy0, 2.28+galaxy0, 2.31+galaxy0, 2.23+galaxy0, 2.27+galaxy0, 2.12, 2.28+galaxy1, 2.31+galaxy1	2.17+galaxy4	2.26+galaxy0, 2.30+galaxy0, 2.28+galaxy0, 2.28+galaxy1	2.17+galaxy4	2.24+galaxy0, 2.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.24+galaxy0	2.24+galaxy0	2.24+galaxy0	2.24+galaxy0	2.24+galaxy0	2.26+galaxy0, 2.17+galaxy2, 2.28+galaxy2, 2.30+galaxy0, 2.28+galaxy0, 2.31+galaxy0, 2.17+galaxy4, 2.28+galaxy1, 2.31+galaxy1	2.26+galaxy0, 2.30+galaxy0, 2.28+galaxy0, 2.28+galaxy1	2.24+galaxy0	2.24+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.9+galaxy0	0.1.9+galaxy0	0.1.9+galaxy0	0.1.9+galaxy0	0.2.4+galaxy0, 0.2.4+galaxy1, 0.2.3+galaxy0	0.2.4+galaxy0, 0.2.4+galaxy1, 0.1.9+galaxy1, 0.2.3+galaxy0	0.1.9+galaxy0	0.1.9+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.3+galaxy1	0.0.3+galaxy1	0.0.3+galaxy1	0.0.3+galaxy1	0.0.5+galaxy1, 0.0.9+galaxy0, 0.0.7+galaxy0	0.0.5+galaxy0, 0.0.5+galaxy1, 0.0.9+galaxy0, 0.0.7+galaxy0, 0.0.4+galaxy0	0.0.3+galaxy1	0.0.3+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/purge_dups/purge_dups/1.2.5+galaxy4	1.2.5+galaxy4	1.2.5+galaxy4	1.2.5+galaxy4	Missing	1.2.6+galaxy1, 1.2.6+galaxy0	1.2.6+galaxy1, 1.2.6+galaxy0	1.2.5+galaxy4	Missing
toolshed.g2.bx.psu.edu/repos/iuc/purge_dups/purge_dups/1.2.6+galaxy0	1.2.6+galaxy0	1.2.6+galaxy0	1.2.6+galaxy0	Missing	1.2.6+galaxy0	1.2.6+galaxy0	1.2.6+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy4	5.0.2+galaxy4	5.0.2+galaxy4	5.0.2+galaxy4	5.0.2+galaxy4	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.0.2+galaxy4	5.0.2+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.3+galaxy2	2.3+galaxy2	2.3+galaxy2	Missing	Missing	Missing	2.3+galaxy3, 2.3+galaxy5	2.3+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy1	1.2a.2+galaxy1	1.2a.2+galaxy1	1.2a.2+galaxy1	Missing	1.2a.2+galaxy3	1.2a.2+galaxy1	Missing	Missing
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy2	3.5+galaxy2	4.9+galaxy1, 4.0+galaxy1, 5.2+galaxy1, 3.4+galaxy0, 3.5+galaxy1, 5.2+galaxy0, 4.8+galaxy1, 3.4+galaxy1, 1.16.1, 5.1+galaxy0, 4.8+galaxy0, 5.0+galaxy0, 4.9+galaxy0, 3.5+galaxy0, 4.4+galaxy0, 4.6+galaxy1, 4.7+galaxy0, 1.16.3, 4.0+galaxy0, 3.4+galaxy2, 3.7+galaxy0, 5.2+galaxy2, 1.16.6, 1.16.5	3.5+galaxy2	3.5+galaxy2	4.9+galaxy1, 4.0+galaxy1, 5.2+galaxy1, 5.2+galaxy0, 5.1+galaxy0, 4.9+galaxy0, 1.16.3, 3.7+galaxy0, 5.2+galaxy2, 1.16.8	4.8+galaxy1, 5.1+galaxy0, 4.4+galaxy0, 5.2+galaxy2	3.5+galaxy2	1.16.5
toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0	4.4+galaxy0	4.4+galaxy0	4.4+galaxy0	4.4+galaxy0	4.9+galaxy1, 4.0+galaxy1, 5.2+galaxy1, 5.2+galaxy0, 5.1+galaxy0, 4.9+galaxy0, 1.16.3, 3.7+galaxy0, 5.2+galaxy2, 1.16.8	4.4+galaxy0	4.4+galaxy0	1.16.5
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.2	4.2	4.2	4.2	4.1, 5.1.0	4.2	5.1.0	4.2	4.2
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
Cut1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Filter1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	1.3.11+galaxy0, 1.3.11+galaxy1, 1.3.11+galaxy2	1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1	0.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	0.1.0, 0.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	9.3+galaxy1	1.1.1, 1.1.0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.14.1+galaxy1	2.14.1+galaxy1	2.14.1+galaxy1	2.14.1+galaxy1	2.14.1+galaxy1	2.16.0+galaxy0	2.10.1+galaxy2, 2.16.0+galaxy0, 2.14.1+galaxy2	2.14.1+galaxy1	2.10.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.14.1+galaxy2	2.14.1+galaxy2	2.14.1+galaxy2	2.14.1+galaxy2	2.14.1+galaxy2	2.16.0+galaxy0	2.14.1+galaxy2	2.14.1+galaxy2	2.10.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.14.1+galaxy1	2.14.1+galaxy1	2.14.1+galaxy1	2.14.1+galaxy1	2.14.1+galaxy1	2.16.0+galaxy0	2.10.1+galaxy2, 2.14.1+galaxy2, 2.16.0+galaxy0	2.14.1+galaxy1	2.10.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.14.1+galaxy2	2.14.1+galaxy2	2.14.1+galaxy2	2.14.1+galaxy2	2.14.1+galaxy2	2.16.0+galaxy0	2.14.1+galaxy2	2.14.1+galaxy2	2.10.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1	2.1.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.3+galaxy1	2.1.3+galaxy1	2.1.3+galaxy1	2.1.3+galaxy1	2.1.3+galaxy1	2.1.3+galaxy1	2.1.3+galaxy1	2.1.3+galaxy1	2.1.1+galaxy1, 2.0.8_beta+galaxy0, 2.1.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/parse_mito_blast/parse_mito_blast/1.0.2+galaxy0	1.0.2+galaxy0	1.0.2+galaxy0	1.0.2+galaxy0	Missing	1.0.2+galaxy0	1.0.2+galaxy0	1.0.2+galaxy0	Missing

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
CONVERTER_gz_to_uncompressed	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
__EXTRACT_DATASET__	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
interactive_tool_blobtoolkit	built-in	built-in	built-in	Missing	Missing	Missing	Missing	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/blobtoolkit/blobtoolkit/3.4.0+galaxy0	3.4.0+galaxy0	4.5.5+galaxy0, 4.5.1+galaxy0, 4.0.7+galaxy2, 4.5.3+galaxy0, 4.0.7+galaxy1	4.5.5+galaxy0, 4.5.1+galaxy0, 4.0.7+galaxy2, 4.5.3+galaxy0, 4.0.7+galaxy1	4.5.5+galaxy0, 4.5.1+galaxy0, 4.0.7+galaxy2, 4.5.3+galaxy0	Missing	4.0.7+galaxy2, 4.5.3+galaxy0, 4.0.7+galaxy1	3.4.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/blobtoolkit/blobtoolkit/4.0.7+galaxy2	4.0.7+galaxy2	4.0.7+galaxy2	4.0.7+galaxy2	4.0.7+galaxy2	Missing	4.0.7+galaxy2	4.0.7+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.15+galaxy0	2.0.15+galaxy0	2.0.15+galaxy0	2.0.15+galaxy0	2.0.15+galaxy0	Missing	2.0.15+galaxy0	2.0.15+galaxy0	2.0.15+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.0+galaxy0	1.2.0+galaxy0	1.2.0+galaxy0	1.3.5+galaxy2, 1.3.6+galaxy0, 1.3.11+galaxy0, 1.3.9+galaxy3, 1.3.5+galaxy0, 1.3.9+galaxy2, 1.3.4+galaxy0, 1.3.10+galaxy0, 1.3.11+galaxy1, 1.3.11+galaxy2, 1.3.9+galaxy1, 1.3.8+galaxy0, 1.3.9+galaxy0	1.3.11+galaxy0, 1.3.11+galaxy1, 1.3.11+galaxy2	1.3.6+galaxy0, 1.3.11+galaxy0, 1.3.11+galaxy1, 1.3.11+galaxy2, 1.3.9+galaxy1, 1.3.9+galaxy0	1.2.0+galaxy0	1.2.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	1.3.11+galaxy0, 1.3.11+galaxy1, 1.3.11+galaxy2	1.3.6+galaxy0	1.3.6+galaxy0	1.3.6+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.4	1.1.4	1.1.4	1.1.4	1.1.4	1.1.4	1.1.4	1.1.4	1.1.1, 1.1.0, 1.1.3
toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.4	2.0.4	2.0.4	2.0.4	2.0.4	2.0.4	2.0.4	2.0.4	2.0.4
toolshed.g2.bx.psu.edu/repos/galaxy-australia/smudgeplot/smudgeplot/0.2.5+galaxy+2	0.2.5+galaxy+2	0.2.5+galaxy+1, 0.2.5+galaxy3	0.2.5+galaxy+2	Missing	Missing	0.2.5+galaxy3	0.2.5+galaxy+2	0.2.5+galaxy+1
toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4	2022.09+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy0	1.0+galaxy0	1.0+galaxy0	1.0+galaxy0	Missing	Missing	1.0+galaxy0	1.0+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.4+galaxy0	5.4.4+galaxy0	5.3.2+galaxy0, 5.4.6+galaxy0, 4.1.4, 5.5.0+galaxy0, 5.3.1+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.7.1+galaxy0, 4.1.2, 5.2.2+galaxy2, 3.0.2+galaxy2, 6.1.0+galaxy0	5.4.4+galaxy0	5.4.4+galaxy0	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.4.6+galaxy0, 5.5.0+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy2	5.4.4+galaxy0	5.3.2+galaxy0, 4.1.4, 5.3.1+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.2.1+galaxy0, 4.1.2, 5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0	5.7.1+galaxy0	5.7.1+galaxy0	5.7.1+galaxy0	5.7.1+galaxy0	5.7.1+galaxy0	5.4.6+galaxy0, 5.5.0+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy2	5.7.1+galaxy0	5.3.2+galaxy0, 4.1.4, 5.3.1+galaxy0, 5.0.0+galaxy0, 5.8.0+galaxy2, 5.2.2+galaxy0, 5.2.1+galaxy0, 4.1.2, 5.2.2+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0	2.2.1+galaxy0	2.2.1+galaxy0	2.2.1+galaxy0	2.2.1+galaxy4, 2.2.1+galaxy3, 2.3+galaxy0, 2.2.1+galaxy1	2.2.1+galaxy4, 2.3+galaxy0	2.3+galaxy0, 2.2.1+galaxy1	2.2.1+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2	2.1.0+galaxy0, 2.0.1+galaxy0	2.0+galaxy2	2.0+galaxy2	2.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2	1.3+galaxy2	1.3+galaxy2	1.3+galaxy2	1.3+galaxy2	1.3+galaxy4	1.3+galaxy3, 1.3+galaxy4	1.3+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	Missing
toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.28+galaxy0	2.28+galaxy0	2.28+galaxy0	2.28+galaxy0	2.28+galaxy0	2.28+galaxy0	2.28+galaxy0	2.28+galaxy0	2.24+galaxy0, 2.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.9+galaxy0	0.1.9+galaxy0	0.1.9+galaxy0	0.1.9+galaxy0	0.2.4+galaxy0, 0.2.4+galaxy1, 0.2.3+galaxy0	0.2.4+galaxy0, 0.2.4+galaxy1, 0.1.9+galaxy1, 0.2.3+galaxy0	0.1.9+galaxy0	0.1.9+galaxy0	Missing
toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.9+galaxy1	0.1.9+galaxy1	0.1.9+galaxy1	0.1.9+galaxy1	0.2.4+galaxy0, 0.2.4+galaxy1, 0.2.3+galaxy0	0.1.9+galaxy1	0.1.9+galaxy1	0.1.9+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.3+galaxy1	0.0.3+galaxy1	0.0.3+galaxy1	0.0.3+galaxy1	0.0.5+galaxy1, 0.0.9+galaxy0, 0.0.7+galaxy0	0.0.5+galaxy0, 0.0.5+galaxy1, 0.0.9+galaxy0, 0.0.7+galaxy0, 0.0.4+galaxy0	0.0.3+galaxy1	0.0.3+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0	5.1.0

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0	5.3.2+galaxy0	5.3.2+galaxy0	5.3.2+galaxy0	5.3.2+galaxy0	5.8.0+galaxy1, 5.8.0+galaxy2, 5.7.1+galaxy0, 6.1.0+galaxy0	5.4.6+galaxy0, 5.5.0+galaxy0, 5.8.0+galaxy1, 5.8.0+galaxy2	5.3.2+galaxy0	5.3.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/1.5.a+galaxy1	1.5.a+galaxy1	Missing	1.5.a+galaxy1	1.5.a+galaxy1	1.5.a+galaxy1	1.5.a+galaxy1	1.5.a+galaxy1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2	1.3+galaxy2	1.3+galaxy2	1.3+galaxy2	1.3+galaxy2	1.3+galaxy4	1.3+galaxy3, 1.3+galaxy4	1.3+galaxy2	Missing
toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	1.3+galaxy6	Missing
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0	5.2.0+galaxy0	5.2.0+galaxy0	5.2.0+galaxy0	5.2.0+galaxy0	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.3.0+galaxy0, 5.3.0+galaxy1, 5.2.0+galaxy1	5.2.0+galaxy0	5.2.0+galaxy0

Data as of 2026-10-06 01:31:44 +0000

Tool	Galaxy Europe	Galaxy Main (US)	Galaxy Australia	Galaxy France	Galaxy Switzerland	Galaxy Canada	Galaxy Belgium	Galaxy Norway
Cut1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Filter1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
Grep1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
cat1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
join1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
random_lines1	built-in	built-in	built-in	built-in	built-in	built-in	built-in	built-in
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0	0.1.0	0.1.0	0.1.0	0.1.0	0.1.0	9.5+galaxy2, 0.1.1, 9.3+galaxy1, 9.5+galaxy3	0.1.0	0.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3	1.1.3
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2	1.1.2	1.1.2	1.1.2	1.1.2	1.1.2	1.1.2	1.1.2	1.1.2
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1	1.1.1
toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0	1.0.0	1.0.0	1.0.0	1.0.0	1.0.1	1.0.0	1.0.0	Missing
toolshed.g2.bx.psu.edu/repos/devteam/fasta_compute_length/fasta_compute_length/1.0.1	1.0.1	1.0.4, 1.0.3, 1.0.0, 1.0.2	1.0.1	1.0.4, 1.0.3, 1.0.2	1.0.4, 1.0.3	1.0.4, 1.0.3	1.0.1	1.0.3
toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1	1.1	1.1	1.2	1.1	1.2	1.2	1.1	1.1
toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.2	1.2	1.2	1.2	1.2	1.2	1.2	1.2	1.2
toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2	1.3.2	1.3.2	1.3.2	1.3.2	1.3.2	1.04.52+galaxy0, 1.04.22+galaxy0	1.3.2	1.3.2
toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1	1.0.1	Missing	1.0.2, 1.0.3	1.0.3	1.0.1	1.0.2	1.0.1	Missing
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_complementbed/2.27.0.0	2.27.0.0	2.27.0.0	2.27.0.0	2.31.1+galaxy0, 2.30.0, 2.29.0, 2.29.2, 2.30.0+galaxy1	2.31.1+galaxy0, 2.30.0, 2.30.0+galaxy1	2.31.1+galaxy0, 2.30.0, 2.19.0, 2.27.1, 2.30.0+galaxy1	2.27.0.0	2.30.0, 2.19.0, 2.29.2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.27.0.2	2.27.0.2	2.27.0.2	2.27.0.2	2.31.1+galaxy0, 2.30.0, 2.30.0+galaxy1, 2.29.0, 2.29.2	2.31.1+galaxy0, 2.30.0, 2.30.0+galaxy1	2.31.1+galaxy0, 2.30.0, 2.30.0+galaxy1, 2.27.1+galaxy1, 2.19.0	2.27.0.2	2.30.0, 2.19.0, 2.29.2
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0	2.27.0.0	2.27.0.0	2.27.0.0	2.29.0, 2.29.2, 2.30.0, 2.30.0+galaxy2, 2.31.1+galaxy0	2.30.0, 2.30.0+galaxy2, 2.31.1+galaxy0, 2.30.0+galaxy1	2.19.0, 2.30.0, 2.30.0+galaxy2, 2.27.1, 2.31.1+galaxy0, 2.30.0+galaxy1	2.27.0.0	2.19.0, 2.29.2, 2.30.0
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy7	0.69.8+galaxy10, 0.69.8+galaxy12	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy12, 0.69.8+galaxy9	0.69.8+galaxy7	0.69.8+galaxy7
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy7	0.69.8+galaxy12, 0.69.8+galaxy9	0.69.8+galaxy7	0.69.8+galaxy7
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_tiles/0.69.8+galaxy7	Missing	Missing	Missing	Missing	Missing	Missing	Missing	Missing
toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.1.0	1.8+galaxy0, 1.9+galaxy0, 1.0.6	1.1.0	1.1.0
toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.8+galaxy1	1.16.8+galaxy1	1.16.8+galaxy1	1.16.8+galaxy1	1.16.8+galaxy1	1.16.11+galaxy1, 1.16.11+galaxy0	1.16.11+galaxy1	1.16.8+galaxy1	1.16.10+galaxy0, 1.16.11+galaxy1, 1.16.9+galaxy0
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0	4.0	4.0	4.0	4.1, 5.1.0	5.1.0, 4.2	5.1.0	4.0	4.1, 5.1.0, 4.2
toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.2	4.2	4.2	4.2	4.1, 5.1.0	4.2	5.1.0	4.2	4.2
upload1	built-in	built-in	Missing	built-in	built-in	built-in	built-in	built-in

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Detection of AMR genes in bacterial genomes

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This learning path aims to teach you the basics of Galaxy and analysis of sequencing data. You will learn how to use Galaxy for analysis, and will be guided through the most common first steps of any genome analysis; quality control and a mapping or assembly of your genomic sequences.

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