Paul Zierep

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Microbiome

Tutorials

• Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community ✍️
• Galaxy Community Building / Creation of resources listing Galaxy workflow for your community ✍️
• Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community ✍️ 🧐
• Galaxy Community Building / Creation of a Galaxy tutorial table for your community ✍️
• Genome Annotation / Secondary metabolite discovery ✍️ 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Microbiome / MGnify v5.0 Amplicon Pipeline 🧐
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition ✍️ 🧐
• Microbiome / Calculating α and β diversity from microbiome taxonomic data ✍️ 🧐
• Microbiome / Taxonomic Profiling and Visualization of Metagenomic Data ✍️ 🧐
• Microbiome / Building an amplicon sequence variant (ASV) table from 16S data using DADA2 🧐
• Microbiome / Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) ✍️ 🧐
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 📝 🧐
• Development in Galaxy / Adding and updating best practice metadata for Galaxy tools using the bio.tools registry ✍️ 🧐

Slides

• Microbiome / Introduction to Microbiome Analysis ✍️

Video Recordings

• Microbiome / Calculating α and β diversity from microbiome taxonomic data 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short) 💬 🗣
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data 💬 🗣

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2025 🧑‍🏫
• From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

20 Merged Pull Requests

See all of the github Pull Requests and github Commits by Paul Zierep.

• Update microbiome gta2025
  template-and-tools
• Fix collection input for diversity toturial
  microbiome
• Fix the hands on in Creation of an interactive Galaxy tools table for your community
  dev
• Update microbiome track
  template-and-tools
• Major update of the introduction to microbiome analysis
  microbiome

Reviewed 15 PRs

We love our community reviewing each other's work!

• updating dada's version for GTN
  microbiome
  GTA
• Metatranscriptomics tutorial: Use contributions format in metadata
  microbiome
• Update tutorial.md and workflow.ga, tested workflow (GTA2025-update material)
  template-and-tools
  microbiome
• Add MGnify amplicon tutorial
  microbiome
• tiny edits to LOTUS2
  microbiome

News

External Links

Favourite Topics

Favourite Formats