Plants

Set of tutorials from various topics that use plant datasets for analysis

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison
plants prokaryote

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
NCBI BLAST+ against the MAdLand
plants

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana
miRNA plants stress tolerance

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

orcid logoSabrina Zander avatar Sabrina ZanderEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoWendi Bacon avatar Wendi Baconorcid logoAnna Syme avatar Anna SymeFabian Recktenwald avatar Fabian Recktenwaldorcid logoTeresa Müller avatar Teresa Müllerorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristina Martins Rodrigues avatar Cristina Martins Rodriguesorcid logoBérénice Batut avatar Bérénice Batutorcid logoKevin Frey avatar Kevin Freyorcid logoBjörn Grüning avatar Björn GrüningStella Eggels avatar Stella EggelsMehmet Tekman avatar Mehmet Tekmanorcid logoMartin Kuhl avatar Martin Kuhlorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoHelena Rasche avatar Helena Rascheorcid logoTom Brown avatar Tom Brownorcid logoDominik Brilhaus avatar Dominik Brilhaus

Funding

These individuals or organisations provided funding support for the development of this resource

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DataPLANT
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Melbourne Bioinformatics
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Australian BioCommons
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MAdLand
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DFG
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The University of Melbourne