Workflows
These workflows are associated with Clinical Metaproteomics 5: Data Interpretation
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
WF5_Data_Interpretation_Worklow
Subina Mehta
Last updated Aug 8, 2024
Launch in Tutorial Mode
License:
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\nQuantified Peptides"]; style 0 stroke:#2c3143,stroke-width:4px; 1["ℹ️ Input Dataset\nMaxQuant Protein Groups"]; style 1 stroke:#2c3143,stroke-width:4px; 2["ℹ️ Input Dataset\nMaxQuant Evidence"]; style 2 stroke:#2c3143,stroke-width:4px; 3["ℹ️ Input Dataset\nAnnotation.txt"]; style 3 stroke:#2c3143,stroke-width:4px; 4["ℹ️ Input Dataset\nComparison Matrix"]; style 4 stroke:#2c3143,stroke-width:4px; 5["Unipept"]; 0 -->|output| 5; 6["Microbial Proteins"]; 1 -->|output| 6; 7["Select"]; 1 -->|output| 7; 8["MSstatsTMT"]; 4 -->|output| 8; 3 -->|output| 8; 2 -->|output| 8; 6 -->|out_file1| 8; 9["HUMAN-Proteins"]; 7 -->|out_file1| 9; 10["MSstatsTMT"]; 4 -->|output| 10; 3 -->|output| 10; 2 -->|output| 10; 9 -->|out_file1| 10;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: