Workflows

These workflows are associated with How to reproduce published Galaxy analyses

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

GTN Training: Galaxy 101 For Everyone

Last updated Aug 25, 2021

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Download Galaxy Workflow.ga Galaxy Australia Galaxy Europe Galaxy France Galaxy Main Import to another server (≥23.0+ only!) 
flowchart TD
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  1["Convert CSV to tabular"];
  0 -->|output| 1;
  2["Datamash"];
  1 -->|tabular| 2;
  05bc9e65-f6ea-4c92-8ce9-186338e77dd0["Output\ndatamash_output"];
  2 --> 05bc9e65-f6ea-4c92-8ce9-186338e77dd0;
  style 05bc9e65-f6ea-4c92-8ce9-186338e77dd0 stroke:#2c3143,stroke-width:4px;
  3["Remove beginning"];
  1 -->|tabular| 3;
  4["Cut"];
  3 -->|out_file1| 4;
  5["Group"];
  3 -->|out_file1| 5;
  09acfbe9-03d7-44b0-aa67-a6016f7e702c["Output\ngroup1"];
  5 --> 09acfbe9-03d7-44b0-aa67-a6016f7e702c;
  style 09acfbe9-03d7-44b0-aa67-a6016f7e702c stroke:#2c3143,stroke-width:4px;
  6["Group"];
  3 -->|out_file1| 6;
  97eba215-78b9-4af6-8b7d-133604a3e834["Output\ngroup2"];
  6 --> 97eba215-78b9-4af6-8b7d-133604a3e834;
  style 97eba215-78b9-4af6-8b7d-133604a3e834 stroke:#2c3143,stroke-width:4px;
  7["Scatterplot w ggplot2"];
  3 -->|out_file1| 7;
  8["Scatterplot w ggplot2"];
  3 -->|out_file1| 8;
  9["Unique"];
  4 -->|out_file1| 9;
  ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6["Output\nunique_output"];
  9 --> ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6;
  style ec39c0ad-eb26-47d6-b9a7-c2e5ffa043c6 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL