Workflows

These workflows are associated with Tracking of mitochondria and capturing mitoflashes

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Capturing mitoflashes

BMCV Group, Heidelberg University

Last updated Nov 20, 2024

Launch in Tutorial Mode question
License: CC-BY-4.0
Tests: ✅ Results: Not yet automated

flowchart TD
  0["Mitochondrion detection"];
  b84bfb33-15eb-4984-b109-fab32f3813df["Output\nSpot Detection of Mitoflashes"];
  0 --> b84bfb33-15eb-4984-b109-fab32f3813df;
  style b84bfb33-15eb-4984-b109-fab32f3813df stroke:#2c3143,stroke-width:4px;
  1["Mitochondrion tracking"];
  0 -->|fn_out| 1;
  a25e8913-0019-4dd3-aed4-8138e7dd8da3["Output\nSpot Detection Across Frames"];
  1 --> a25e8913-0019-4dd3-aed4-8138e7dd8da3;
  style a25e8913-0019-4dd3-aed4-8138e7dd8da3 stroke:#2c3143,stroke-width:4px;
  2["Curve fitting to measured intensities"];
  1 -->|fn_out| 2;
  a978b043-f089-4d41-8f5d-0df99915dd45["Output\nCurve Fitting for Mitoflash Detection"];
  2 --> a978b043-f089-4d41-8f5d-0df99915dd45;
  style a978b043-f089-4d41-8f5d-0df99915dd45 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!

Hands-on: Importing a workflow

Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.

Click on galaxy-upload Import at the top-right of the screen

Provide your workflow

Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”

Option 2: Upload the workflow file in the box labelled “Archived Workflow File”

Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL