Alevin: Quantification and analysis of 3-prime tagged-end single-cell sequencing data

Metadata

Links

• bio.tools: Salmon

EDAM Operations

• Expression analysis
• Sequence composition calculation
• RNA-Seq quantification

EDAM Topics

• Gene expression
• Transcriptomics
• RNA-Seq

Observed Tool Versions

Within GTN tutorials

1.10.1+galaxy2

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• Galaxy@Pasteur
• MISSISSIPPI
• UseGalaxy.cz

1.10.1+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.cz
• UseGalaxy.no

Relevant Tutorials

• Single Cell / Generating a single cell matrix using Alevin